Abstract
Deformable contours are widely applied in medical image segmentation, which are usually derived from appearance cues in medical images. However, the performance of deformed contour is suppressed in ultrasonic image segmentation by the weak, misleading boundaries and the complex shapes of lesion regions. In this paper, a novel deformable contour model is proposed for segmenting ultrasound image sequences, which aims to utilize the powerful ability of deep learning network in learning of image features to help the deformable contour model resist weaknessses of ultrasound images. The deep learning network is designed as a densely connected siamese architecture. It trains a contrastive loss that serves as a boundary searching metric of a deformable contour to segment ultrasound image sequences. In this network, the densely residual blocks and the attention focused blocks are designed to make the network efficiently propagate features and focus on the lesion region, and the feature memory module stores and generates the prior features to aid the evolution of a deformable contour. Moreover, for resisting the impact of misleading or weak boundary, the shape similarity of lesion regions is used to as a shape prior and integrated into the framework of deformable contour to constrain the change of contours. The experimental results for the clinical ultrasound image sequences demonstrate that compared to the state-of-the-art methods, the proposed method can provide more accurate results in HIFU ultrasound images.













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Kim J, Choi W, Park EY, Kang Y, Lee KJ, Kim HH, Kim WJ, Kim C (2019) Real-time photoacoustic thermometry combined with clinical ultrasound imaging and high-intensity focused ultrasound. IEEE Trans Biomed Eng 66(12):3330–3338
Long J, Shelhamer E, Darrell T (2015) Fully convolutional networks for semantic segmentation. 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) pp 3431–3440
Hu Y, Soltoggio A, Lock R, Carter S (2019) A fully convolutional two-stream fusion network for interactive image segmentation. Neural Netw:Off J Int Neural Netw Soc 109:31–42
Ronneberger O, Fischer P, Brox T (2015) U-net: Convolutional networks for biomedical image segmentation. In: International Conference on Medical Image Computing & Computer-Assisted Intervention
Oktay O, Schlemper J, Folgoc LL, Lee M, Heinrich M, Misawa K, Mori K, McDonagh S, Hammerla NY, Kainz B, Glocker B, Rueckert D (2018) Attention u-net: Learning where to look for the pancreas. arXiv:1804.03999
Zhou Z, Siddiquee MMR, Tajbakhsh N, Liang J (2019) Unet++: Redesigning skip connections to exploit multiscale features in image segmentation. IEEE Transactions on Medical Imaging
Li H, Fang J, Liu S, Liang X, Yang X, Mai Z, Van MT, Wang T, Chen Z, Ni D (2019) Cr-unet: A composite network for ovary and follicle segmentation in ultrasound images. IEEE J Biomed Health Inform 24:974–983
Marcos D, Tuia D, Kellenberger B, Zhang L, Bai M, Liao R, Urtasun R (2018) Learning deep structured active contours end-to-end. 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition pp 8877–8885
Chen X, Williams BM, Vallabhaneni SR, Czanner G, Williams RS, Zheng Y (2019) Learning active contour models for medical image segmentation. 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) pp 11624–11632
Fang Z, Qiao M, Guo Y, Wang Y, Li J, Zhou S, Chang C (2019) Combining a fully convolutional network and an active contour model for automatic 2d breast tumor segmentation from ultrasound images. J Med Imaging Health Informatics 9:1510–1515
Hu Y, Guo Y, Wang Y, Yu J, Li J, Zhou S, Chang C (2019) Automatic tumor segmentation in breast ultrasound images using a dilated fully convolutional network combined with an active contour model. Med Phys 46:215–228
Xu C, Prince JL (1998) Snakes, shapes, and gradient vector flow. IEEE Trans Image Process 7(3):359–69
Paragios N, Deriche R (2000) Geodesic active contours and level sets for the detection and tracking of moving objects. IEEE Trans Pattern Anal Mach Intell 22(3):266–280
Guo Y, Şengür A, Tian JW (2016) A novel breast ultrasound image segmentation algorithm based on neutrosophic similarity score and level set. Comput Methods Programs Biomed 123:43–53
Zhao Y, Zhao J, Yang J, Liu Y, Zhao Y, Zheng Y, Xia L, Wang Y (2017) Saliency driven vasculature segmentation with infinite perimeter active contour model. Neurocomputing 259:201–209
Radoglou-Grammatikis P, Robolos K, Sarigiannidis P, Argyriou V, Lagkas T, Sarigiannidis A, Goudos SK, Wan S (2021) Modelling, detecting and mitigating threats against industrial healthcare systems: a combined sdn and reinforcement learning approach. IEEE Transactions on Industrial Informatics
Wan S, Xia Y, Qi L, Yang YH, Atiquzzaman M (2020) Automated colorization of a grayscale image with seed points propagation. IEEE Transactions on Multimedia
Zhou S, Wang J, Zhang S, Liang Y, Gong Y (2016) Active contour model based on local and global intensity information for medical image segmentation. Syst Eng Electron 186((C)):107–118
Yu H, He F, Pan Y (2018) A novel region-based active contour model via local patch similarity measure for image segmentation. Multimedia Tools Appl 3:1–23
Wang, L., Li, M., Fang, X., Nappi, M., & Wan, S. (2022). Improving random walker segmentation using a nonlocal bipartite graph. Biomedical Signal Processing and Control, 71, 103154.
Gao Y, Bouix S, Shenton ME, Tannenbaum AR (2013) Sparse texture active contour. IEEE Trans Image Process 22:3866–3878
Yu J, Tan M, Zhang H, Tao D, Rui Y (2019) Hierarchical deep click feature prediction for fine-grained image recognition. IEEE Transactions on Pattern Analysis and Machine Intelligence
Zhao Y, Li H, Wan S, Sekuboyina A, Hu X, Tetteh G, Piraud M, Menze B (2019) Knowledge-aided convolutional neural network for small organ segmentation. IEEE J Biomed Health Inform 23(4):1363–1373
Fang J, Liu H, Liu J, Zhou H, Liu H (2021) Fuzzy region-based active contour driven by global and local fitting energy for image segmentation. Appl Soft Comput 100:106982
Subudhi P, Mukhopadhyay S (2021) A statistical active contour model for interactive clutter image segmentation using graph cut optimization. Signal Process 4:108056
Van Ginneken B, Frangi AF, Staal JJ, Haar TBM, Romeny VMA (2002) Active shape model segmentation with optimal features. IEEE Trans Med Imaging 21(8):924–933
Zhang S, Zhan Y, Dewan M, Huang J, Metaxas DN, Zhou XS (2012) Towards robust and effective shape modeling: Sparse shape composition. Med Image Anal 16(1):265–277
Huang X, Dione DP, Compas CB, Papademetris X, Lin BA, Bregasi A, Sinusas AJ, Staib LH, Duncan JS (2014) Contour tracking in echocardiographic sequences via sparse representation and dictionary learning. Med Image Anal 18(2):253–271
Korez R, Ibragimov B, Likar B, Pernuš F, Vrtovec T (2015) A framework for automated spine and vertebrae interpolation-based detection and model-based segmentation. IEEE Trans Med Imaging 34(8):1649–1662
Ni B, He F, Yuan ZY (2015) Segmentation of uterine fibroid ultrasound images using a dynamic statistical shape model in hifu therapy. Comput Med Imaging Graph 46(3):302–314
Wang, H., Zhang, D., Ding, S. et al. Rib segmentation algorithm for X-ray image based on unpaired sample augmentation and multi-scale network. Neural Comput & Applic (2021). https://doi.org/10.1007/s00521-021-06546-x
Wachinger C, Yigitsoy M, Rijkhorst EJ, Navab N (2012) Manifold learning for image-based breathing gating in ultrasound and mri. Med Image Anal 16(4):806–818
Gao Z, Li Y, Wan S (2020) Exploring deep learning for view-based 3d model retrieval. ACM Trans Multimed Comput Commun Appl 16(1):1–21
Zhou X, Huang X, Duncan JS, Yu W (2013) Active contours with group similarity. 2013 IEEE Conference on Computer Vision and Pattern Recognition pp 2969–2976
Ni B, He F, teng Pan Y, Yuan Z (2016) Using shapes correlation for active contour segmentation of uterine fibroid ultrasound images in computer-aided therapy. Appl Math-A J Chin Univ 31:37–52
Gamarra M (2020) Convexity shape constraints for retinal blood vessel segmentation and foveal avascular zone detection. Computers in Biology and Medicine 127
Yan S, Tai XC, Liu J, Huang HY (2020) Convexity shape prior for level set based image segmentation method. IEEE Transactions on Image Processing PP(99):1–1
Milletari F, Navab N, Ahmadi SA (2016) V-net: Fully convolutional neural networks for volumetric medical image segmentation. 2016 Fourth International Conference on 3D Vision (3DV) pp 565–571
Alom MZ, Yakopcic C, Hasan M, Taha T, Asari V (2019) Recurrent residual u-net for medical image segmentation. J Med Imaging 6:014006–014006
Yu J, Li J, Yu Z, Huang Q (2019) Multimodal transformer with multi-view visual representation for image captioning. IEEE Transactions on Circuits and Systems for Video Technology PP(99):1–1
Ding S, Qu S, Xi Y, Wan S (2019) Stimulus-driven and concept-driven analysis for image caption generation. Neurocomputing
Huang G, Liu Z, Weinberger KQ (2017) Densely connected convolutional networks. 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) pp 2261–2269
Yang W, Zhou Q, Lu J, Wu X, Zhang S, Latecki L (2018) Dense deconvolutional network for semantic segmentation. 2018 25th IEEE International Conference on Image Processing (ICIP) pp 1573–1577
Li H, He X, Zhou F, Yu Z, Ni D, Chen S, Wang T, Lei B (2019) Dense deconvolutional network for skin lesion segmentation. IEEE J Biomed Health Inform 23:527–537
Park B, Yu S, Jeong J (2019) Densely connected hierarchical network for image denoising. 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) pp 2104–2113
Yuan Y, Qin W, Guo X, Buyyounouski M, Hancock SH, Han B, Xing L (2019) Prostate segmentation with encoder-decoder densely connected convolutional network (ed-densenet). 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019) pp 434–437
Minnema J, Wolff J, Koivisto J, Lucka F, Batenburg KJ, Forouzanfar T, Eijnatten M (2021) Comparison of convolutional neural network training strategies for cone-beam ct image segmentation. Comput Methods Prog Biomed 207:106192
Fu J, Liu J, Tian H, Fang Z, Lu H (2019) Dual attention network for scene segmentation. 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) pp 3141–3149
Wang G, Li W, Zuluaga MA, Pratt R, Patel PA, Aertsen M, Doel T, David AL, Deprest J, Ourselin S et al (2018) Interactive medical image segmentation using deep learning with image-specific fine tuning. IEEE Trans Med Imaging 37(7):1562–1573
Shan H, Zhang Y, Yang Q, Kruger U, Kalra MK, Sun L, Cong W, Wang G (2018) 3-d convolutional encoder-decoder network for low-dose ct via transfer learning from a 2-d trained network. IEEE Trans Med Imaging 37(6):1522
Opbroek AV, Achterberg HC, Vernooij MW, Bruijne MD (2018) Transfer learning for image segmentation by combining image weighting and kernel learning. IEEE Transactions on Medical Imaging PP(99):1–1
Han D, Liu Q, Fan W (2018) A new image classification method using cnn transfer learning and web data augmentation. Expert Syst Appl 95:43–56
Yu J, Zhu C, Zhang J, Huang Q, Tao D (2019) Spatial pyramid-enhanced netvlad with weighted triplet loss for place recognition. IEEE Transactions on Neural Networks and Learning Systems
Dong N, Trullo R, Lian J, Li W, Petitjean C, Su R, Qian W, Shen D (2018) Medical image synthesis with deep convolutional adversarial networks. IEEE Transactions on Biomedical Engineering PP(99):1–1
Wolterink JM, Kamnitsas K, Ledig C, Išgum I (2018) Generative adversarial networks and adversarial methods in biomedical image analysis. arXiv preprint arXiv:1810.10352
Yu B, Zhou L, Wang L, Shi Y, Fripp J, Bourgeat P (2019) Ea-gans: Edge-aware generative adversarial networks for cross-modality mr image synthesis. IEEE Transactions on Medical Imaging PP(99):1–1
Li Y, Chen Y, Shi Y (2020) Brain tumor segmentation using 3d generative adversarial networks. International Journal of Pattern Recognition and Artificial Intelligence
Lei B, Xia Z, Jiang F, Jiang X, Wang S (2020) Skin lesion segmentation via generative adversarial networks with dual discriminators. Med Image Anal 64:101716
Kugelman J, Alonso-Caneiro D, Read SA, Vincent SJ, Collins MJ (2021) Data augmentation for patch-based oct chorio-retinal segmentation using generative adversarial networks. Neural Computing and Applications (4)
Zagoruyko S, Komodakis N (2015) Learning to compare image patches via convolutional neural networks. 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) pp 4353–4361
Cai Q, Pan Y, Yao T, Yan CC, Mei T (2018) Memory matching networks for one-shot image recognition. 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition pp 4080–4088
Li Z, Kamnitsas K, Glocker B (2021) Analyzing overfitting under class imbalance in neural networks for image segmentation. IEEE Trans Med Imaging 40(3):1065–1077. https://doi.org/10.1109/TMI.2020.3046692
Kamran SA, Hossain KF, Tavakkoli A, Zuckerbrod SL, Sanders KM, Baker SA (2021) Rv-gan : Retinal vessel segmentation from fundus images using multi-scale generative adversarial networks
Petit O, Thome N, Rambour C, Soler L (2021) U-net transformer: Self and cross attention for medical image segmentation
Valanarasu JMJ, Oza P, Hacihaliloglu I, Patel VM (2021) Medical transformer: Gated axial-attention for medical image segmentation. arXiv:2102.10662
He K, Zhang X, Ren S, Sun J (2014) Spatial pyramid pooling in deep convolutional networks for visual recognition. IEEE Trans Pattern Anal Mach Intell 37(9):1904–16
Wold S, Esbensen KH, Geladi P (1987) Principal component analysis
Ye Y, He C (2012) Adaptive active contours without edges. Math Comput Model 55(5–6):1705–1721
Huang Y, Yan HY, Wen YW, Yang X (2018) Rank minimization with applications to image noise removal. Inf Sci 429:147–163
Beck A, Teboulle M (2009) A fast iterative shrinkage-thresholding algorithm for linear inverse problems. SIAM J Imaging Sci 2:183–202
Cai J, Candès E, Shen Z (2010) A singular value thresholding algorithm for matrix completion. SIAM J Optim 20:1956–1982
Hermans A, Beyer L, Leibe B (2017) In defense of the triplet loss for person re-identification. arXiv:1703.07737
Acknowledgements
This work was supported in part by the National Natural Science Foundation of China (No.62172438), the fundamental research funds for the central universities (31412111303, 31512111310) and by the open project from the State Key Laboratory for Novel Software Technology, Nanjing University, under Grant No.KFKT2019B17.
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Ni, B., Liu, Z., Cai, X. et al. Segmentation of ultrasound image sequences by combing a novel deep siamese network with a deformable contour model. Neural Comput & Applic 35, 14535–14549 (2023). https://doi.org/10.1007/s00521-022-07054-2
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DOI: https://doi.org/10.1007/s00521-022-07054-2