Abstract
In order to reconstruct a network that consists of partially interacted phosphorylation/dephosphorylation pathways, combinatorial operations are designed based on the binary phosphorylation/dephosphorylation trees. By using these operations, a polynomial time complexity can be achieved from the bottom-up processes of interacted phosphorylation/dephosphorylation trees. To study the signaling mechanism of cell communication in terms of information theory, a kind of code describing the structure of partially interacted phosphorylation/dephosphorylation trees are also proposed.
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http://www.med.nagoya-u.ac.jp/Yakuri/English-page/e-group/e-rho-kinase-group-folder/e-rho-kinase-group.html
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This work was presented in part at the 11th International Symposium on Artificial Life and Robotics, Oita, Japan, January 23–25, 2006
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Liu, JQ., Shimohara, K. Partially interacted phosphorylation/dephosphorylation trees extracted from signaling pathways in cells. Artif Life Robotics 11, 123–127 (2007). https://doi.org/10.1007/s10015-006-0413-9
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DOI: https://doi.org/10.1007/s10015-006-0413-9