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Automatic MR brain image segmentation using a multiseed based multiobjective clustering approach

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Abstract

In this paper, the automatic segmentation of a multispectral magnetic resonance image of the brain is posed as a clustering problem in the intensity space. The automatic clustering problem is thereafter modelled as solving a multiobjective optimization (MOO) problem, optimizing a set of cluster validity indices simultaneously. A multiobjective clustering technique, named MCMOClust, is used to solve this problem. MCMOClust utilizes a recently developed simulated annealing based multiobjective optimization method as the underlying optimization strategy. Each cluster is divided into several small hyperspherical subclusters and the centers of all these small sub-clusters are encoded in a string to represent the whole clustering. For assigning points to different clusters, these local sub-clusters are considered individually. For the purpose of objective function evaluation, these sub-clusters are merged appropriately to form a variable number of global clusters. Two cluster validity indices, one based on the Euclidean distance, XB-index, and another recently developed point symmetry distance based cluster validity index, Sym-index, are optimized simultaneously to automatically evolve the appropriate number of clusters present in MR brain images. A semi-supervised method is used to select a single solution from the final Pareto optimal front of MCMOClust. The present method is applied on several simulated T1-weighted, T2-weighted and proton density normal and MS lesion magnetic resonance brain images. Superiority of the present method over Fuzzy C-means, Expectation Maximization clustering algorithms and a newly developed symmetry based fuzzy genetic clustering technique (Fuzzy-VGAPS), are demonstrated quantitatively. The automatic segmentation obtained by multiseed based multiobjective clustering technique (MCMOClust) is also compared with the available ground truth information.

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References

  1. Gonzalez RC, Woods RE (1992) Digital image processing. Addison-Wesley, Reading

    Google Scholar 

  2. Suckling J, Sigmundsson T, Greenwood K, Bullmore E (1999) A modified fuzzy clustering algorithm for operator independent brain tissue classification of dual echo MR images. Magnetic Resonance Imaging 17:1065–1076

    Article  Google Scholar 

  3. Bhandarkar SM, Zhang H (1999) Image segmentation using evolutionary computation. IEEE Trans Evol Comput 3(1):1–21

    Article  Google Scholar 

  4. Saha S, Bandyopadhyay S (2007) MRI brain image segmentation by fuzzy symmetry based genetic clustering technique. In: Proceedings of the 2007 IEEE congress on evolutionary computation (CEC’07), pp 4417–4424

  5. Cordón O, Damas S, Santamaría J, Martí R (2008) Scatter search for the point-matching problem in 3d image registration. INFORMS J Comput 20(1):55–68

    Article  MathSciNet  Google Scholar 

  6. Saha S, Bandyopadhyay S (2009) MR brain image segmentation using a multi-seed based automatic clustering technique. Fund Inform 97(1–2):199–214

    MathSciNet  Google Scholar 

  7. Bandyopadhyay S, Saha S (2008) A point symmetry based clustering technique for automatic evolution of clusters. IEEE Trans Knowl Data Eng 20(11):1–17

    Article  Google Scholar 

  8. Saha S, Bandyopadhyay S (2008) Application of a new symmetry based cluster validity index for satellite image segmentation. IEEE Geosci Remote Sens Lett 5(2):166–170

    Article  Google Scholar 

  9. Deb K (2001) Multi-objective optimization using evolutionary algorithms. Wiley, New York

    MATH  Google Scholar 

  10. Bandyopadhyay S, Saha S, Maulik U, Deb K (2008) A simulated annealing based multi-objective optimization algorithm: AMOSA. IEEE Trans Evol Comput 12(3):269–283

    Article  Google Scholar 

  11. Bandyopadhyay S, Saha S (2010) A generalized automatic clustering algorithm in a multiobjective framework. Patern Recognit (communicated)

  12. Xie XL, Beni G (1991) A validity measure for fuzzy clustering. IEEE Trans Pattern Anal Mach Intell 13:841–847

    Article  Google Scholar 

  13. Bezdek JC (1981) Pattern recognition with fuzzy objective function algorithms. Plenum, New York

    MATH  Google Scholar 

  14. Jain AK, Murty MN, Flynn PJ (1999) Data clustering: a review. ACM Comput Surv 31(3):264–323

    Article  Google Scholar 

  15. Metropolis N, Rosenbluth AW, Rosenbloth MN, Teller AH, Teller E (1953) Equation of state calculation by fast computing machines. J Chem Phys 21(6):1087–1092

    Google Scholar 

  16. Geman S, Geman D (1984) Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images. IEEE Trans Pattern Anal Mach Intell 6(6):721–741

    Article  MATH  Google Scholar 

  17. Bandyopadhyay S, Saha S (2007) GAPS: A clustering method using a new point symmetry based distance measure. Pattern Recognit 40:3430–3451

    Article  MATH  Google Scholar 

  18. Everitt BS (1993) Cluster analysis, 3rd edn. Halsted Press, New York

    Google Scholar 

  19. Ben-Hur A, Guyon I (2003) Detecting stable clusters using principal component analysis in methods in molecular biology. Humana Press, Clifton

    Google Scholar 

  20. Luque JM, Santana-Quintero LV, Hernández-Díaz AG, Coello CAC, Caballero R (2009) g-dominance: Reference point based dominance for multiobjective metaheuristics. Eur J Oper Res 197(2):685–692

    Article  Google Scholar 

  21. BrainWeb: Simulated brain database. Available: http://www.bic.mni.mcgill.ca/brainweb

  22. Cocosco CA, Kollokian V, Kwan RKS, Pike GB, Evans AC (1997) Brainweb: Online interface to a 3d MRI simulated brain database. NeuroImage 5:425

    Google Scholar 

  23. Kwan RS, Evans A, Pike G (1999) MRI simulation-based evaluation of image-processing and classification methods. IEEE Trans Med Imaging 18(11):1085–1097

    Article  Google Scholar 

  24. Kwan RKS, Evans AC, Pike GB (1996) An extensible MRI simulator for post-processing evaluation. In: VBC’96: Proceedings of the 4th international conference on visualization in biomedical computing. Springer, London, pp 135–140

    Google Scholar 

  25. Collins DL, Zijdenbos AP, Kollokian V, Sled JG, Kabani NJ, Holmes CJ, Evans AC (1998) Design and construction of a realistic digital brain phantom. IEEE Trans Med Imaging 17(3):463–468

    Article  Google Scholar 

  26. Bandyopadhyay S, Pal SK, Aruna B (2004) Multi-objective GAs, quantitative indices and pattern classification. IEEE Trans Syst Man Cybern B 34(5):2088–2099

    Article  Google Scholar 

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Correspondence to Sriparna Saha.

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Saha, S., Bandyopadhyay, S. Automatic MR brain image segmentation using a multiseed based multiobjective clustering approach. Appl Intell 35, 411–427 (2011). https://doi.org/10.1007/s10489-010-0231-6

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