Skip to main content
Log in

Prediction of tautomer ratios by embedded-cluster integral equation theory

  • Published:
Journal of Computer-Aided Molecular Design Aims and scope Submit manuscript

An Erratum to this article was published on 01 April 2010

Abstract

The “embedded cluster reference interaction site model” (EC-RISM) approach combines statistical-mechanical integral equation theory and quantum-chemical calculations for predicting thermodynamic data for chemical reactions in solution. The electronic structure of the solute is determined self-consistently with the structure of the solvent that is described by 3D RISM integral equation theory. The continuous solvent-site distribution is mapped onto a set of discrete background charges (“embedded cluster”) that represent an additional contribution to the molecular Hamiltonian. The EC-RISM analysis of the SAMPL2 challenge set of tautomers proceeds in three stages. Firstly, the group of compounds for which quantitative experimental free energy data was provided was taken to determine appropriate levels of quantum-chemical theory for geometry optimization and free energy prediction. Secondly, the resulting workflow was applied to the full set, allowing for chemical interpretations of the results. Thirdly, disclosure of experimental data for parts of the compounds facilitated a detailed analysis of methodical issues and suggestions for future improvements of the model. Without specifically adjusting parameters, the EC-RISM model yields the smallest value of the root mean square error for the first set (0.6 kcal mol−1) as well as for the full set of quantitative reaction data (2.0 kcal mol−1) among the SAMPL2 participants.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  1. Kloss T, Heil J, Kast SM (2008) J Phys Chem B 112:4337–4343

    Article  CAS  Google Scholar 

  2. Beglov D, Roux B (1997) J Phys Chem 101:7821–7826

    CAS  Google Scholar 

  3. Kovalenko A, Hirata F (1998) Chem Phys Lett 290:237–244

    Article  CAS  Google Scholar 

  4. Taylor PJ (2009) Tautomeric teasers: SAMPL (to be replaced by overview paper)

  5. Kast SM, Kloss T (2008) J Chem Phys 129:236101

    Article  Google Scholar 

  6. Perkyns J, Pettitt BM (1992) Chem Phys Lett 190:626–630

    Article  CAS  Google Scholar 

  7. Perkyns J, Pettitt BM (1992) J Chem Phys 97:7656–7666

    Article  CAS  Google Scholar 

  8. Frisch MJ et al (2004) Gaussian 03, Rev D.02/E.01. Gaussian, Inc., Wallingford

    Google Scholar 

  9. Berendsen HJC, Grigera JR, Straatsma TP (1987) J Phys Chem 91:6269

    Article  CAS  Google Scholar 

  10. Maw S, Sato H, Ten-no S, Hirata F (1997) Chem Phys Lett 276:20–25

    CAS  Google Scholar 

  11. Sato H, Hirata F (1999) J Chem Phys 111:8545–8555

    Article  CAS  Google Scholar 

  12. Kovalenko A, Ten-no S, Hirata F (1999) J Comput Chem 20:928–936

    Article  CAS  Google Scholar 

  13. Talman JD (1978) J Comput Phys 29:35–48

    Article  Google Scholar 

  14. Rossky PJ, Friedman HL (1980) J Chem Phys 72:5694–5700

    Article  CAS  Google Scholar 

  15. Wang J, Wolf RM, Caldwell JW, Kollman PA, Case DA (2004) J Comput Chem 25:1157–1174

    Article  CAS  Google Scholar 

  16. Chirlian LE, Francl MM (1987) J Comput Chem 8:894–905

    Article  CAS  Google Scholar 

Download references

Acknowledgments

We thank the Deutsche Forschungsgemeinschaft, the Fonds der Chemischen Industrie, and the Adolf-Messer-Stiftung for financial support.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Stefan M. Kast.

Additional information

An erratum to this article can be found at http://dx.doi.org/10.1007/s10822-010-9360-6

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kast, S.M., Heil, J., Güssregen, S. et al. Prediction of tautomer ratios by embedded-cluster integral equation theory. J Comput Aided Mol Des 24, 343–353 (2010). https://doi.org/10.1007/s10822-010-9340-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10822-010-9340-x

Keywords

Navigation