Abstract
The use of MP2 level quantum mechanical (QM) calculations on isolated heteroaromatic ring systems for the prediction of the tautomeric propensities of whole molecules in a crystalline environment was examined. A Polarisable Continuum Model was used in the calculations to account for environment effects on the tautomeric relative stabilities. The calculated relative energies of tautomers were compared to relative abundances within the Cambridge Structural Database (CSD) and the Protein Data Bank (PDB). The work was focussed on 84 annular tautomeric forms of 34 common ring systems. Good agreement was found between the calculations and the experimental data even if the quantity of these data was limited in many cases. The QM results were compared to those produced by much faster semiempirical calculations. In a search for other sources of the useful experimental data, the relative numbers of known compounds in which prototropic positions were often substituted by heavy atoms were also analysed. A scheme which groups all annular tautomeric transformations into 10 classes was developed. The scheme was designed to encompass a comprehensive set of known and theoretically possible tautomeric ring systems generated as part of a previous study. General trends across analogous ring systems were detected as a result. The calculations and statistics collected on crystallographic data as well as the general trends observed should be useful for the better modelling of annular tautomerism in the applications such as computer-aided drug design, small molecule crystal structure prediction, the naming of compounds and the interpretation of protein—small molecule crystal structures.










Similar content being viewed by others
References
Katritzky AR, Lagowski JM (1963) Prototropic Tautomerism of Heteroaromatic compounds: I. General discussion and methods of study. Adv Heterocycl Chem 1:311–338
Katritzky AR, Lagowski JM (1963) Prototropic Tautomerism of Heteroaromatic compounds: II. Six-membered rings. Adv Heterocycl Chem 1:339–437
Katritzky AR, Lagowski JM (1963) Prototropic Tautomerism of Heteroaromatic compounds: III. Five-membered rings and one hetero atom. Adv Heterocycl Chem 2:1–26
Katritzky AR, Lagowski JM (1963) Prototropic Tautomerism of Heteroaromatic compounds: IV. Five-membered rings with two or more hetero atoms. Adv Heterocycl Chem 2:27–81
Minkin V, Garnovsk A, Elguero J, Katritzky A, Denisko O (2000) The Tautomerism of Heterocycles: Five-membered rings with two or more heteroatoms. Adv Heterocycl Chem 76:157–323
Stanovnik B, Tiler M, Katritzky A, Denisko O (2001) The Tautomerism of Heterocycles. Six-membered heterocycles: Part 1, Annular Tautomerism. Adv Heterocycl Chem 81:253–303
Stanovnik B, Tisler M, Katritzky A, Denisko O (2006) The Tautomerism of Heterocycles: substituent Tautomerism of six-membered ring Heterocycles. Adv Heterocycl Chem 91:1–134
Elguero J, Katritzky A, Denisko O (2000) Prototropic Tautomerism of Heterocycles: Heteroaromatic tautomerism. General overview and methodology. Adv Heterocycl Chem 76:1–84
Shcherbakova I, Elguero J, Katritzky A (2000) Tautomerism of Heterocycles: condensed five-six, five-five, and six-six ring systems with heteroatoms in both rings. Adv Heterocycl Chem 77:51–113
Martin YC (2009) Let’s not forget tautomers. J Comput Aided Mol Des 23:693–704
Alkorta I, Blanco F, Elguero J (2008) Application of Free-Wilson matrices to the analysis of the tautomerism and aromaticity of azapentalenes: a DFT study. Tetrahedron 64:3826–3836
Alkorta I, Blanco F, Elguero J (2008) Heteropentalenes aromaticity: a theoretical study. J Mol Struct THEOCHEM 851:75–83
Alkorta I, Elguero J, Liebman J (2006) The Annular Tautomerism of imidazoles and pyrazoles: the possible existence of nonaromatic forms. Struct Chem 17:439–444
Allen F (2002) The cambridge structural database: a quarter of a million crystal structures and rising. Acta Crystallogr B 58:380–388
Berman H, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov I, Bourne P (2000) The Protein Data Bank. Nucl Acids Res 28:235–242
Hao MH, Haq O, Muegge I (2007) Torsion angle preference and energetics of small-molecule ligands bound to proteins. J Chem Inf Model 47:2242–2252
Pitt W, Parry D, Perry B, Groom C (2009) Heteroaromatic rings of the future. J Med Chem 52:2952–2963
Platonov MO, Samijlenko SP, Sudakov OO, Kondratyuk IV, Hovorun DM (2005) To what extent can methyl derivatives be regarded as stabilized tautomers of xanthine? Spectrochim Acta Part A Mol Biomol Spectrosc 62:112–114
Alkorta I, Goya P, Elguero J, Singh SP (2007) A simple approach to the tautomerism of aromatic heterocycles. Natl Acad Sci Letts 30:139–159
Bruno I, Cole J, Edgington P, Kessler M, Macrae C, McCabe P, Pearson J, Taylor R (2002) New software for searching the Cambridge structural database and visualizing crystal structures. Acta Crystallogr B 58:389–397
James CA, Weininger D, Delay J SMARTS. http://www.daylight.com/dayhtml/doc/theory/index.html
Schreyer A, Blundell T (2009) CREDO: a protein–ligand interaction database for drug discovery. Chem Biol Drug Des 73:157–167
Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247:536–540
Dalby A, Nourse J, Hounshell D, Gushurst A, Grier D, Leland B, Laufer J (1992) Description of several chemical structure file formats used by computer programs developed at Molecular Design Limited. J Chem Inf Comput Sci 32:244–255
Weininger D (1988) SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules. J Chem Inf Comput Sci 28:31–36
Idrissi MS, Senechal M, Sauvaitre H, Cotrait M, Garrigou-Lagrange C (1980) J Chim Phys 77:195
Claramunt RM, Lopez C, Garcia MA, Otero MD, Torres MR, Pinilla E, Alarcon SM, Alkorta I, Elguero J (2001) Untitled. New J Chem 25:1061–1068
Bairoch A, Apweiler R, Wu C, Barker W, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin M, Natale D, O’Donovan C, Redaschi N, Yeh LS (2005) The universal protein resource (UniProt). Nucl Acids Res 33:D154–D159
Alkorta I, Elguero J (2005) Theoretical estimation of the Annular Tautomerism of Indazoles. J Phys Org Chem 18:719–724
Acknowledgments
AJCC thanks the Pfizer Institute for Pharmaceutical Materials Sciences for funding. WRP thanks UCB Celltech for funding his secondment to Professor Tom Blundell’s group. Thanks also to Dr Yvonne Martin for her encouragement and invitation to submit a paper in this subject area
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Cruz-Cabeza, A.J., Schreyer, A. & Pitt, W.R. Annular tautomerism: experimental observations and quantum mechanics calculations. J Comput Aided Mol Des 24, 575–586 (2010). https://doi.org/10.1007/s10822-010-9345-5
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10822-010-9345-5