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Detection of mitotic cells in breast cancer histopathological images using deep versus handcrafted features

  • 1176: Artificial Intelligence and Deep Learning for Biomedical Applications
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Abstract

One of the most important processes in the diagnosis of breast cancer, which is the leading mortality rate in women, is the detection of the mitosis stage at the cellular level. In literature, many studies have been proposed on the computer-aided diagnosis (CAD) system for detecting mitotic cells in breast cancer histopathological images. In this study, comparative evaluation of conventional and deep learning based feature extraction methods for automatic detection of mitosis in histopathological images are focused. While various handcrafted features are extracted with textural/spatial, statistical and shape-based methods in conventional approach, the convolutional neural network structure proposed on the deep learning approach aims to create an architecture that extracts the features of small cellular structures such as mitotic cells. Mitosis detection/counting is an important process that helps us assess how aggressive or malignant the cancer’s spread is. In the proposed study, approximately 180,000 non-mitotic and 748 mitotic cells are extracted for the evaluations. It is obvious that the classification stage cannot be performed properly due to the imbalanced numbers of mitotic and non-mitotic cells extracted from histopathological images. Hence, the random under-sampling boosting (RUSBoost) method is exploited to overcome this problem. The proposed framework is tested on mitosis detection in breast cancer histopathological images dataset provided from the International Conference on Pattern Recognition (ICPR) 2014 contest. In the results obtained with the deep learning approach, 79.42% recall, 96.78% precision and 86.97% F-measure values are achieved more successfully than handcrafted methods. A client/server-based framework has also been developed as a secondary decision support system for use by pathologists in hospitals. Thus, it is aimed that pathologists will be able to detect mitotic cells in various histopathological images more easily through necessary interfaces.

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References

  1. Bloom H, Richardson W (1957) Histological grading and prognosis in breast cancer: A study of 1409 cases of which 359 have been followed for 15 years. Br J Cancer 11(3):359–377

    Article  Google Scholar 

  2. Chan TH, Jia K, Gao S, Lu J, Zeng Z, Ma Y (2015) Pcanet: A simple deep learning baseline for image classification? IEEE Trans Image Process 24(12):5017–5032

    Article  MathSciNet  Google Scholar 

  3. Chawla NV, Lazarevic A, Hall LO, Bowyer KW (2003) Smoteboost: Improving prediction of the minority class in boosting. In: European conference on principles of data mining and knowledge discovery in databases, PKDD’03. Springer, pp. 107–119

  4. Chen Y, Lin Z, Zhao X, Wang G, Gu Y (2014) Deep learning-based classification of hyperspectral data. IEEE J Sel Top Appl Earth Obs Remote Sens 7(6):2094–2107

    Article  Google Scholar 

  5. Chen LC, Papandreou G, Kokkinos I, Murphy K, Yuille AL (2016) Deeplab: Semantic image segmentation with deep convolutional nets, atrous convolution, and fully connected crfs. arXiv:1606.00915

  6. Cheng JZ, Ni D, Chou YH, Qin J, Tiu CM, Chang YC, Huang CS, Shen D, Chen CM (2016) Computer-aided diagnosis with deep learning architecture: applications to breast lesions in us images and pulmonary nodules in ct scans. Sci Rep 6:1–13

    Article  Google Scholar 

  7. Cheng J, Veronika M, Rajapakse JC (2010) Identifying cells in histopathological images. In: Recognizing patterns in signals, speech, images and videos. Springer, pp. 244–252

  8. Ciresan DC, Giusti A, Gambardella LM, Schmidhuber J (2013) Mitosis detection in breast cancer histology images with deep neural networks. In: International conference on medical image computing and computer-assisted intervention, MICCAI’13. Springer, pp. 411–418

  9. Collaborative Group on Hormonal Factors in Breast Cancer et al (2002) Breast cancer and breastfeeding: collaborative reanalysis of individual data from 47 epidemiological studies in 30 countries, including 50 302 women with breast cancer and 96 973 women without the disease. Lancet 360(9328):187–195

    Article  Google Scholar 

  10. Costa AF, Humpire-Mamani G, Traina AJM (2012) An efficient algorithm for fractal analysis of textures. In: 25th IEEE SIBGRAPI conference on graphics, patterns and images, pp 39–46

  11. Dalal N, Triggs B (2005) Histograms of oriented gradients for human detection. In: IEEE computer society conference on computer vision and pattern recognition, CVPR’05, vol. 1, pp 886–893

  12. Dalle JR, Leow WK, Racoceanu D, Tutac AE, Putti TC (2008) Automatic breast cancer grading of histopathological images. In: 30th IEEE annual international conference of the engineering in medicine and biology society, EMBC’08, pp 3052–3055

  13. De Angelis R, Sant M, Coleman MP, Francisci S, Baili P, Pierannunzio D, Trama A, Visser O, Brenner H, Ardanaz E et al (2014) Cancer survival in europe 1999–2007 by country and age: results of eurocare-5—a population-based study. Lancet Oncol 15(1):23–34

    Article  Google Scholar 

  14. Dundar MM, Badve S, Bilgin G, Raykar V, Jain R, Sertel O, Gurcan MN (2011) Computerized classification of intraductal breast lesions using histopathological images. IEEE Trans Biomed Eng 58(7):1977–1984

    Article  Google Scholar 

  15. Elston CW, Ellis IO (1991) Pathological prognostic factors in breast cancer. i. the value of histological grade in breast cancer: experience from a large study with long-term follow-up. Histopathology 19(5):403–410

    Article  Google Scholar 

  16. Felzenszwalb PF, Girshick R, McAllester D, Ramanan D (2010) Object detection with discriminatively trained part-based models. IEEE Trans Pattern Anal Mach Intell 32(9):1627–1645

    Article  Google Scholar 

  17. Gençtav A., Aksoy S, Önder S (2012) Unsupervised segmentation and classification of cervical cell images. Pattern Recognit 45(12):4151–4168

    Article  Google Scholar 

  18. Guo H, Viktor HL (2004) Learning from imbalanced data sets with boosting and data generation: the databoost-im approach. ACM SIGKDD Explor Newsl 6(1):30–39

    Article  Google Scholar 

  19. Gurcan MN, Pan T, Shimada H, Saltz J (2006) Image analysis for neuroblastoma classification: Segmentation of cell nuclei. In: 28th Annual international conference of the IEEE engineering in medicine and biology society, EMBC’06, pp 4844–4847

  20. Hafiane A, Bunyak F, Palaniappan K (2008) Clustering initiated multiphase active contours and robust separation of nuclei groups for tissue segmentation. In: 19th International conference on pattern recognition, ICPR’08, pp 1–4

  21. Hagwood C, Bernal J, Halter M, Elliott J (2012) Evaluation of segmentation algorithms on cell populations using cdf curves. IEEE Trans Med Imaging 31(2):380–390

    Article  Google Scholar 

  22. Haralick RM, Shanmugam K (1973) Textural features for image classification. IEEE Trans Sys Man Cybern 6:610–621

    Article  Google Scholar 

  23. He K, Zhang X, Ren S, Sun J (2016) Deep residual learning for image recognition. In: Proceedings of the IEEE conference on computer vision and pattern recognition, pp 770–778

  24. Irshad H, Jalali S, Roux L, Racoceanu D, Hwee LJ, Le Naour G, Capron F (2013) Automated mitosis detection using texture, SIFT features and HMAX biologically inspired approach. J Pathol Inform, vol 4 (Suppl)

  25. Irshad H, Roux L, Racoceanu D (2013) Multi-channels statistical and morphological features based mitosis detection in breast cancer histopathology. In: 35th IEEE annual international conference of the engineering in medicine and biology society, EMBC’13, pp 6091–6094

  26. Khan AM, El-Daly H, Rajpoot NM (2012) A gamma-gaussian mixture model for detection of mitotic cells in breast cancer histopathology images. In: 21st IEEE international conference on pattern recognition, ICPR’12, pp 149–152

  27. Krawczyk B, Jelen L, Krzyzak A, Fevens T (2012) Oversampling methods for classification of imbalanced breast cancer malignancy data. In: Comput. Vis. and Graph., Springer, pp 483–490

  28. Krawczyk B, Jelen L, Krzyzak A, Fevens T (2014) One-class classification decomposition for imbalanced classification of breast cancer malignancy data. In: Artificial intelligence and soft computing, pp 539–550

  29. LeCun Y, Bengio Y et al (1995) Convolutional networks for images, speech, and time series. Handb Brain Theory Neural Netw 3361(10):1995

    Google Scholar 

  30. Litjens G, Sánchez CI, Timofeeva N, Hermsen M, Nagtegaal I, Kovacs I, Hulsbergen-Van De Kaa C, Bult P, Van Ginneken B, Van Der Laak J (2016) Deep learning as a tool for increased accuracy and efficiency of histopathological diagnosis. Sci Rep 6:26286

    Article  Google Scholar 

  31. Liu AA, Li K, Kanade T (2010) Mitosis sequence detection using hidden conditional random fields. In: IEEE international symposium on biomedical imaging: From Nano to Macro, ISBI’10, pp 580–583

  32. M Naqi S, Sharif M (2017) Recent developments in computer aided diagnosis for lung nodule detection from ct images: A review. Curr Med Imaging Rev 13(1):3–19

    Article  Google Scholar 

  33. Ojala T, Pietikainen M, Maenpaa T (2002) Multiresolution gray-scale and rotation invariant texture classification with local binary patterns. IEEE Trans Pattern Anal Mach Intell 24(7):971–987

    Article  Google Scholar 

  34. Ojansivu V, Heikkila J (2008) Blur insensitive texture classification using local phase quantization. In: Image and signal Process. Springer, pp. 236–243

  35. Otsu N (1979) A threshold selection method from gray-level histograms. IEEE Trans Syst Man Cybern 9(1):62–66

    Article  Google Scholar 

  36. Ouyang W, Wang X (2013) Joint deep learning for pedestrian detection. In: Proceedings of the IEEE international conference on computer vision, ICCV’13, ppp 2056–2063

  37. Paul A, Dey A, Mukherjee DP, Sivaswamy J, Tourani V (2015) Regenerative random forest with automatic feature selection to detect mitosis in histopathological breast cancer images. In: International conference on medical image computing and computer-assisted intervention MICCAI’15, Springer, pp 94–102

  38. Porter P (2008) Westernizing women’s risks? breast cancer in lower-income countries. N Engl J Med 358(3):213–216

    Article  Google Scholar 

  39. Rao KN, Rao TV, Laksmi R (2012) A novel class imbalance learning method using subset filtering. Int J Sci Eng Res 3:95–103

    Google Scholar 

  40. Ren S, He K, Girshick R, Sun J (2015) Faster r-cnn: Towards real-time object detection with region proposal networks. In: Advances in neural information processing systems, pp 91–99

  41. Roux L, Racoceanu D, Capron F, Calvo J, Attieh E, Le Naour G, Gloaguen A (2012) Mitos & Atypia detection of mitosis and evaluation of nuclear atypia score in breast cancer histological images. http://mitos-atypia-14.grand-challenge.org. Online; Accessed 2018-01-15

  42. Rybski PE, Huber D, Morris DD, Hoffman R (2010) Visual classification of coarse vehicle orientation using histogram of oriented gradients features. In: IEEE intelligent vehicles symposium, IV’10, pp 921–928

  43. Seiffert C, Khoshgoftaar TM, Van Hulse J, Napolitano A (2010) Rusboost: A hybrid approach to alleviating class imbalance. IEEE Trans Syst Man Cybern A Sys Hum 40(1):185–197

    Article  Google Scholar 

  44. Sertel O, Catalyurek UV, Shimada H, Guican M (2009) Computer-aided prognosis of neuroblastoma: Detection of mitosis and karyorrhexis cells in digitized histological images. In: 31st IEEE annual international conference of the engineering in medicine and biology society, EMBC’09, pp 1433–1436

  45. Siegel RL, Miller KD, Jemal A (2016) Cancer statistics, 2016. CA: A Cancer J Clin 66(1):7–30

    Google Scholar 

  46. Sommer C, Fiaschi L, Hamprecht F, Gerlich DW et al (2012) Learning-based mitotic cell detection in histopathological images. In: 21st IEEE international conference on pattern recognition, ICPR’12, pp 2306–2309

  47. Suzani A, Rasoulian A, Seitel A, Fels S, Rohling RN, Abolmaesumi P (2015) Deep learning for automatic localization, identification, and segmentation of vertebral bodies in volumetric mr images. In: SPIE medical imaging, International society for optics and photonics, pp 941514–941514

  48. Todoroki Y, Han XH, Iwamoto Y, Lin L, Hu H, Chen Y (2017) Detection of liver tumor candidates from ct images using deep convolutional neural networks. In: International conference on innovation in medicine and healthcare, Springer, pp 140–145

  49. Van Hulse J, Khoshgoftaar TM, Napolitano A (2007) Experimental perspectives on learning from imbalanced data. In: Proceedings of the 24th international conference on machine learning, pp 935–942

  50. Wan S, Huang X, Lee HC, Fujimoto JG, Zhou C (2015) Spoke-lbp and ring-lbp: New texture features for tissue classification. In: IEEE 12th international symposium on biomedical imaging, ISBI’15, pp 195–199

  51. Wan T, Liu X, Chen J, Qin Z (2014) Wavelet-based statistical features for distinguishing mitotic and non-mitotic cells in breast cancer histopathology. In: IEEE international conference on image processing, ICIP’14, pp 2290–2294

  52. Zhan T, Chen Y, Hong X, Lu Z, Chen Y (2017) Brain tumor segmentation using deep belief networks and pathological knowledge. CNS Neurol Disord Drug Targets (Formerly Curr Drug Targets-CNS Neurol Disorde) 16(2):129–136

    Google Scholar 

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Acknowledgements

This work was supported by Yildiz Technical University, Scientific Research Projects Coordination Department, Project Number: 2014-04-01-KAP01.

We also thank to organizers of Mitosis-Atypia-2014 contest and providers of dataset released in International Conference of Pattern Recognition, ICPR’14.

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Correspondence to Gokhan Bilgin.

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Sigirci, I.O., Albayrak, A. & Bilgin, G. Detection of mitotic cells in breast cancer histopathological images using deep versus handcrafted features. Multimed Tools Appl 81, 13179–13202 (2022). https://doi.org/10.1007/s11042-021-10539-2

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