Abstract
Due to the difficulty to diagnose lung cancer, it is important to integrate content-based image retrieval methods with the pulmonary nodule classification process, since they are capable of retrieving similar cases from large image databases that were previously diagnosed. The goal of this paper is to evaluate an integrated image feature vector, composed of 3D attributes of margin sharpness and texture, on similar pulmonary nodule retrieval, and to optimize the runtime of nodule comparison process with a graphics processing unit (GPU). Retrieval efficiency was evaluated on the ten most similar cases, on different multiprocessor architectures. Results showed that integrated attributes obtained higher efficiency on similar nodule retrieval, with an increase of up to 2.6 percentage points compared to isolated margin sharpness and texture descriptors. Results also showed that GPU increased nodule retrieval performance with a speedup of 23.7\(\times \) on nodule comparison runtime.








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Aerts HJ, Velazquez ER, Leijenaar RT, Parmar C, Grossmann P, Carvalho S, Bussink J, Monshouwer R, Haibe-Kains B, Rietveld D et al (2014) Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach. Nat Commun 5:4006
Akgül CB, Rubin DL, Napel S, Beaulieu CF, Greenspan H, Acar B (2011) Content-based image retrieval in radiology: current status and future directions. J Digit Imag 24(2):208–222
Armato SG III, Mclennan G, Bidaut L, Mcnitt-gray MF, Meyer CR, Reeves AP, Zhao B, Aberle DR, Henschke CI, Hoffman EA, Kazerooni EA, Macmahon H, Beek EJRV, Yankelevitz D, Biancardi AM, Bland PH, Brown MS (2011) The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans. Med Phys 38:915–931
Bedo MVN, Santos DP, Ponciano-Silva M, Azevedo-Marques PM, Carvalho APLF, Traina-Junior C (2016) Endowing a content-based medical image retrieval system with perceptual similarity using ensemble strategy. J Digit Imag 29(1):22–37
Bugatti PH, Kaster DS, Ponciano-Silva M, Traina C Jr, Azevedo-Marques PM, Traina AJ (2014) PRoSPer: perceptual similarity queries in medical CBIR systems through user profiles. Comput Biol Med 45:8–19
Choi WJ, Choi TS (2014) Automated pulmonary nodule detection based on three-dimensional shape-based feature descriptor. Comput Meth Progr Biomed 113(1):37–54
Doi K (2007) Computer-aided diagnosis in medical imaging: historical review, current status and future potential. Comput Med Imag Graph 31(4–5):198–211
Ferreira Jr JR, Oliveira MC (2015) Cloud-based NoSQL open database of pulmonary nodules for computer-aided lung cancer diagnosis and reproducible research. In: Proceedings of the 2015 annual meeting of the society for imaging informatics in medicine (SIIM), pp 1–4
Ferreira Jr JR, Oliveira MC (2015) GPU-optimized pulmonary nodule retrieval based on 3D margin sharpness descriptors. In: Proceedings of XI workshop de Visão computacional (WVC), pp 182–187
Ghoneim DM, Toussaint G, Constans JM, de Certaines JD (2003) Three dimensional texture analysis in MRI: a preliminary evaluation in gliomas. Magnet Reson Imag 21(9):983–987
Haralick RM, Shanmugam K, Dinstein IH (1973) Textural features for image classification. IEEE Trans Syst Man Cybern 6:610–621
Jayalakshmi T, Santhakumaran A (2011) Statistical normalization and back propagation for classification. Int J Comput Theory Eng 3(1):1793–8201
Kirk DB, Wen-mei WH (2010) Programming massively parallel processors: a hands-on approach. Morgan Kaufmann, USA
Lam M, Disney T, Pham M, Raicu D, Furst J, Susomboon R (2007) Content-based image retrieval for pulmonary computed tomography nodule images. Med Imag 6516:65,160N–65,160N-12
Lam MO, Disney T, Raicu DS, Furst J, Channin DS (2007) BRISC—an open source pulmonary nodule image retrieval framework. J Digit Imag 20(1):63–71
Levman JE, Martel AL (2011) A margin sharpness measurement for the diagnosis of breast cancer from magnetic resonance imaging examinations. Acad Radiol 18(12):1577–1581
Liu L (2013) Computing infrastructure for big data processing. Front Comput Sci 7(2):165–170
Mehdi A, Vassili K, Eduard S, Vahid T (2014) A comprehensive framework for automatic detection of pulmonary nodules in lung CT images. Image Anal Stereol 33(1):13–27
Montagnat J, Breton V, Magnin I et al (2003) Using grid technologies to face medical image analysis challenges. In: Proceedings of the first international workshop on biomedical computations on the grid (BioGrid), pp 588–593
Müller H, Müller W, Squire DM, Marchand-Maillet S, Pun T (2001) Performance evaluation in content-based image retrieval: overview and proposals. Pattern Recognit Lett 22(5):593–601
Ng G, Song Y, Cai W, Zhou Y, Liu S, Dagan Feng D (2014) Hierarchical and binary spatial descriptors for lung nodule image retrieval. In: 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (IEEE EMBC), pp 6463–6466
Oliveira MC, Cirne W, Azevedo-Marques PM (2007) Towards applying content-based image retrieval in the clinical routine. Future Gener Comput Syst 23(3):466–474
Oliveira MC, Ferreira JR (2013) A bag-of-tasks approach to speed up the lung nodules retrieval in the bigdata age. In: Proceedings of the 15th IEEE International Conference on E-health Networking, Application & Services (IEEE HealthCom), pp 632–636
Pacheco P (2011) An introduction to parallel programming. Elsevier, Amsterdam
Prochazka F, Oliveira MC (2012) Aplicabilidade de GPUs de baixo custo na otimização da análise de similaridade de imagens. In: Proceedings of the XXV Conference on Graphics, Patterns and Images (SIBGRAPI), pp 18–23
Silva MPd, Souza JP, Bugatti PH, Bedo MV, Kaster DS, Braga RT, Bellucci AD, Azevedo-Marques PM, Traina C, Traina AJ (2013) Does a CBIR system really impact decisions of physicians in a clinical environment? In: Proceedings of 26th IEEE international symposium on computer-based medical systems (IEEE CBMS), pp 41–46
Traina AJ, Balan AG, Bortolotti LM, Traina C (2004) Content-based image retrieval using approximate shape of objects. In: Proceedings of the 17th IEEE international symposium on computer-based medical systems (IEEE CBMS), pp 91–96
Truong MT, Ko JP, Rossi SE, Rossi I, Viswanathan C, Bruzzi JF, Marom EM, Erasmus JJ (2014) Update in the evaluation of the solitary pulmonary nodule. Radiographics 34(6):1658–1679
Tsymbal A, Meissner E, Kelm M, Kramer M (2014) Towards cloud-based image-integrated similarity search in big data. In: Proceedings of the 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI), pp 593–596
Xu J, Napel S, Greenspan H, Beaulieu CF, Agrawal N, Rubin D (2012) Quantifying the margin sharpness of lesions on radiological images for content-based image retrieval. Med. Phys. 39:5405–5418
Yadav K, Mittal A, Ansari M, Vishwarup V (2012) Parallel implementation of similarity measures on GPU architecture using CUDA. Ind J Comput Sci Eng 3(1):1–9
Zhang X, Liu W, Dundar M, Badve S, Zhang S (2015) Towards large-scale histopathological image analysis: hashing-based image retrieval. IEEE Trans Med Imag 34(2):496–506
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Ferreira Junior, J.R., Oliveira, M.C. & de Azevedo-Marques, P.M. Integrating 3D image descriptors of margin sharpness and texture on a GPU-optimized similar pulmonary nodule retrieval engine. J Supercomput 73, 3451–3467 (2017). https://doi.org/10.1007/s11227-016-1818-4
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DOI: https://doi.org/10.1007/s11227-016-1818-4