Abstract
A novel hybrid algorithm for the tissue segmentation of brain magnetic resonance images is proposed. The core of the algorithm is a probabilistic neural network (PNN) in which weighting factors are added to the summation layer, such that partial volume effects can be taken into account in the modeling process. The mean vectors for the probability density function estimation and the corresponding weighting factors are generated by a hierarchical scheme involving a self-organizing map neural network and an expectation maximization algorithm. Unlike conventional PNN, this approach circumvents the need for training sets. Tissue segmentation results from various algorithms are compared and the effectiveness and robustness of the proposed approach are demonstrated.
Similar content being viewed by others
Reference
Alfano B, Brunetti A (1997) Unsupervised automated segmentation of the normal brain using a multispectral relaxometric magnetic resonance approach. Magn Reson Med 37(1):84–93
Bezdek JC, Hall LO, Clark LP (1993) Review of MR image segmentation techniques using pattern recognition. Med Phys 20(4):1033–1048
Bishop CM (1995) Neural networks for pattern recognition. Clarendon Press, Oxford
Clarke LP, Hall LO (1995) MRI segmentation: methods and applications. Magn Reson Imag 13(3):343–368
Cohen G, Andreasen NC, Alliger R, Arndt S, Kuan J, Ehrhardt J (1992) Segmentation techniques for the classification of brain tissue using magnetic resonance imaging. Psychiatry Res 45(1):33–51
Dawant B, Hartmann S (1999) Automatic 3-D segmentation of internal structures of the head in MR images using a combination of similarity and free-form transformations: part i, methodology and validation on normal subjects. IEEE Trans Med Imaging 18(10):909–916
Dempter AP, Laird NM (1977) Maximum likelihood from Incomplete data via the EM Algorithm. J Roy Statist Soc 39(1):1–38
Florack LMJ (1992) Scale and the differential structure of images. Image and Vision Computing, pp 376–388
Gllenbe E, Feng Y (1996) Neural network methods for volumetric magnetic resonance imaging of the human brain. Proc IEEE 84(10):1488–1496
Hall LO, Bezdek JC (1992) A comparison of neural network and fuzzy clustering techniques in segmenting magnetic resonance images of the brain. IEEE Trans Neural Netw 3(5):672–681
Haralick RM, Shapiro LG (1985) Image segmentation techniques. Comput Vis Graph Im Proc 29:100–132
Harring S, Viergever MA (1993) A multiscale approach to image segmentation using Kohonen networks. Tech. Report RUU-CS-93-06, Utrecht University, the Nethlands
Harris G, Andreasen NC, Cizadlo T, Bailey JM, Bockholt HJ, Magnotta VA, Arndt S (1999) Improving tissue classification in MRI: a three-dimensional multispectral discriminant analysis method with automated training class selection. J Comput Assist Tomogr 23(1):144–154
Kohonen T (2000) Self-organizing maps, 3rd edn. Springer, Berlin New York Heidelberg
Kwan RKS, Evans AC, Pike GB (1999) MRI simulation-based evaluation of image-processing and classification methods. IEEE Trans Med Imaging 18(11):1085–1097. http://www.bic.mni.mcgill.ca/brainweb/
Leemput KV, Maes F, Vandermeulen D, Suetens P (1999) Automated model-based bias field correction of MR images of the brain. IEEE Trans Med Imaging 18(10):885–896
Magnotta V, Bockholt HJ (2003) Subcortical, cerebellar, and magnetic resonance based consistent brain image registration. Neuroimage 19(2 Pt 1):233–245
Mallat SG, Zhong S (1992) Characterization of signals from multi-scale edges. IEEE Trans Pattern Anal Mach Intell 14(7):710–723
Masters T (1995) Advanced algorithms for neural networks: a C++ sourcebook. Wiley, New York
Mechelli A, Price CJ, Friston KJ, and Ashburner J (2005) Voxel-based morphometry of the human brain: methods and applications. Current Medical Imaging Reviews, pp 105–113. http://www.fil.ion.ucl.ac.uk/spm/
Ranganath S (1995) Contour extraction from cardiac MRI studies using snakes. IEEE Trans Med Imaging 14(2):328–338
Shattuck D, Sandor-Leahy S (2001) Magnetic resonance image tissue classification using a partial volume model. NeuroImage 13(5):856–876
Smith SM, Jenkinson M, Woolrich MW, Beckmann CF, Matthews PM (2004) Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage 23(S1):208–219. http://www.fmrib.ox.ac.uk/fsl/
Suzuki H, Toriwaki J (1991) Automatic segmentation of head MRI images by knowledge guided thresholding. Comput Med Imag Graph 15(4):233–240
Theodoridis S, Koutroumbas K (1999) Pattern recognition. Academic Press, New York
Wells WM, Grimson WEL (1996) Adaptive segmentation of MRI data, IEEE Trans Med Imag 15:429–442
Zhang Y, Brady M (2001) Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm. IEEE Trans Med Imaging 20(1):45–57
Zijdenobos AP, Dawant BM (1994) Brain segmentation and white matter lesion detection in MR images. Crit Rev Biomed Eng 22(5–6):401–465
Acknowledgements
The authors would like to thank the Autonomous Control Engineering Center at the University of New Mexico and the following people for their helpful contributions: Dr. Lee Friedman of The MIND Institute and Dr. Vincent Magnotta of the University of Iowa. This work was supported in part by a Merit Review grant from the Department of Veteran Affairs and the MIND Institute (Albuquerque).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Song, T., Gasparovic, C., Andreasen, N. et al. A hybrid tissue segmentation approach for brain MR images. Med Bio Eng Comput 44, 242–249 (2006). https://doi.org/10.1007/s11517-005-0021-1
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11517-005-0021-1