References
Protein Data Bank Japan (PDBj) http://pdbj.org/pdbj_aboutus.html. Accessed June 2011
Institute for Protein Research (IPR), Osaka University http://www.protein.osaka-u.ac.jp/index_e.php. Accessed June 2011
Research collaboratory for structural genomics (RCSB) PDB http://www.pdb.org. Accessed June 2011
Berman HM, Henrick K, Nakamura H (2003) Announcing the worldwide Protein Data Bank. Nat Struct Biol 10(12):980
National Bioscience Database Center (NBDC) http://biosciencedbc.jp/?lng=en&pg=1. Accessed June 2011
Statistics for PDB structures that are deposited and processed by year and site http://www.wwpdb.org/stats.html. Accessed June 2011
Westbrook J, Ito N, Nakamura H, Henrick K, Berman HM (2005) PDBML: the representation of archival macromolecular structure data in XML. Bioinformatics 21(7):988–992
Warr WA (2010) Collaboration, competition, validation and plans for the future. An interview with Gerard Kleywegt, Head of the Protein Data Bank in Europe. J Comput-Aided Mol Des 24:887–890
Schierz AC, Soldatova LN, King RD (2007) Overhauling the PDB. Nat Biotechnol 25:437–442
PDBj RDF http://pdbj.org/rdf. Accessed June 2011
Structure Navigator http://pdbj.org/stnavix. Accessed June 2011
Electrostatic surface of functional site (eF-site) http://pdbj.org/efsite; eF-seek. http://pdbj.org/efseek. Accessed June 2011
Kinjo AR, Nakamura H (2009) Comprehensive structural classification of ligand binding motifs in proteins. Structure 17:234–246
Geometric indexing with refined alignment finder (GIRAF) http://pdbj.org/giraf/. Accessed June 2011
Electron microscopy navigator (EM-Navi) http://pdbj.org/emnavi/?&lang=en. Accessed June 2011
Encyclopedia of protein structures (eProtS) http://www.pdbj.org/eprots/index_en.cgi. Accessed June 2011
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Warr, W.A. Protein Data Bank Japan (PDBj): an interview with Haruki Nakamura of Osaka University. J Comput Aided Mol Des 25, 791–793 (2011). https://doi.org/10.1007/s10822-011-9460-y
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10822-011-9460-y