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An Unconditionally Energy Stable Penalty Immersed Boundary Method for Simulating the Dynamics of an Inextensible Interface Interacting with a Solid Particle

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Abstract

In this paper, a novel penalty method based on the immersed boundary formulation is proposed for simulating the transient Stokes flow with an inextensible interface enclosing a suspended solid particle. The main idea of this approach relies on the penalty techniques by modifying the constitutive equation of Stokes flow to weaken the incompressibility condition, relating the surface divergence to the elastic tension \(\sigma \) to relax the interface’s inextensibility, and connecting the particle surface-velocity with the particle surface force \({\varvec{F}}\) to regularize the particle’s rigid motion. The advantage of these regularized governing equations is that when they are discretized by the standard centered difference scheme on a staggered grid, the resulting linear system can easily be reduced by eliminating the unknowns \(p_h, \sigma _h\) and \({\varvec{F}}_h\) directly, so that we just need to solve a smaller linear system of the velocity approximation \({\varvec{u}}_h\). This advantage is preserved and even enhanced when such approach is applied to the transient Stokes flow with multiple compound vesicles. Moreover, this smaller linear system is symmetric and negative-definite, which enables us to use efficient linear solvers. Another important feature of the proposed method is that the discretization scheme is unconditionally stable in the sense that an appropriately defined energy functional associated with the discrete system is decreasing and hence bounded in time. We numerically test the accuracy and stability of the immersed boundary discretization scheme. The tank-treading and tumbling motions of inextensible interface with a suspended solid particle in the simple shear flow will be studied extensively. The simulation of the motion of multiple compound vesicles will be performed as well. Numerical results illustrate the superior performance of the proposed penalty method.

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References

  1. Allen, T., Cullis, P.: Drug delivery systems: entering the mainstream. Science 303, 1818–1822 (2004)

    Article  Google Scholar 

  2. Cortez, R., Minion, M.: The blob projection method for immersed boundary problems. J. Comput. Phys. 161, 428–453 (2000)

    Article  MATH  MathSciNet  Google Scholar 

  3. Fauci, L.J., Fogelson, A.L.: Truncated newton methods and the modeling of complex immersed elastic structures. Commun. Pure Appl. Math. 66, 787–818 (1993)

    Article  MathSciNet  Google Scholar 

  4. Harlow, F.H., Welsh, J.E.: Numerical calculation of time-dependent viscous incompressible flow of fluid with a free surface. Phys. Fluids 8, 2181–2189 (1965)

    Article  Google Scholar 

  5. Hughes, T.J.R., Liu, W.K., Brooks, A.: Finite element analysis of incompressible viscous flows by the penalty function formulation. J. Comput. Phys. 30, 1–60 (1979)

    Article  MATH  MathSciNet  Google Scholar 

  6. Kantsler, V., Steinberg, V.: Orientation and dynamics of a vesicle in tank-treading motion in shear flow. Phys. Rev. Lett. 95, 258101 (2005)

    Article  Google Scholar 

  7. Keller, S.R., Skalak, R.: Motion of a tank-treading ellipsoidal particle in a shear flow. J. Fluid Mech. 120, 27–47 (1982)

    Article  MATH  Google Scholar 

  8. Kim, Y., Lai, M.-C.: Simulating the dynamics of inextensible vesicles by the penalty immersed boundary method. J. Comput. Phys. 229, 4840–4853 (2010)

    Article  MATH  MathSciNet  Google Scholar 

  9. Kim, Y., Peskin, C.S.: Penalty immersed boundary method for an elastic boundary with mass. Phys. Fluids 19, 053103 (2007)

    Article  Google Scholar 

  10. Kraus, M., Wintz, W., Seifert, U., Lipowsky, R.: Fluid vesicles in shear flow. Phys. Rev. Lett. 77, 3685–3688 (1996)

    Article  Google Scholar 

  11. Lai, M.-C., Hu, W.-F., Lin, W.-W.: A fractional step immersed boundary method for stokes flow with an inextensible interface enclosing a solid particle. SIAM J. Sci. Comput. 34, B692–B710 (2012)

    Article  MATH  MathSciNet  Google Scholar 

  12. Lai, M.-C., Tseng, Y.-H., Huang, H.: An immersed boundary method for interfacial flow with insoluble surfactant. J. Comput. Phys. 227, 7279–7293 (2008)

    Article  MATH  MathSciNet  Google Scholar 

  13. Leveque, R.J., Li, Z.: Immersed interface methods for Stokes flow with elastic boundaries or surface tension. SIAM J. Sci. Comput. 18, 709–735 (1997)

    Article  MATH  MathSciNet  Google Scholar 

  14. Mayo, A.A., Peskin, C.S.: An implicit numerical method for fluid dynamics problems with immersed elastic boundaries. Contemp. Math. 141, 261–277 (1993)

    Article  MathSciNet  Google Scholar 

  15. Misbah, C.: Vacillating breathing and tumbling of vesicles under shear flow. Phys. Rev. Lett. 96, 028104 (2006)

    Article  Google Scholar 

  16. Newren, E.P., Fogelson, A.L., Guy, R.D., Kirby, R.M.: Unconditionally stable discretizations of the immersed boundary equations. J. Comput. Phys. 222, 702–719 (2007)

    Article  MATH  MathSciNet  Google Scholar 

  17. Noguchi, H., Gompper, G.: Swinging and tumbling of fluid vesicles in shear flow. Phys. Rev. Lett. 98, 128103 (2007)

    Article  Google Scholar 

  18. Peskin, C.S.: The immersed boundary method. Acta Numer. 11, 479–517 (2002)

    Article  MATH  MathSciNet  Google Scholar 

  19. Stockie, J.M., Wetton, B.R.: Analysis of stiffness in the immersed boundary method and implications for time-stepping schemes. J. Comput. Phys. 154, 41–64 (1999)

    Article  MATH  Google Scholar 

  20. Taira, K., Colonius, T.: The immersed boundary method: a projection approach. J. Comput. Phys. 225, 2118–2137 (2007)

    Article  MATH  MathSciNet  Google Scholar 

  21. Temam, R.: Navier–Stokes Equations: Theory and Numerical Analysis, Revised ed. Elsevier Science Publishers B.V, Amsterdam (1984)

    Google Scholar 

  22. Tu, C., Peskin, C.S.: Stability and instability in the computation of flows with moving immersed boundaries: a comparison of three methods. SIAM J. Sci. Stat. Comput. 13, 1361–1376 (1992)

    Article  MATH  MathSciNet  Google Scholar 

  23. Veerapaneni, S.K., Gueyffier, D., Zorin, D., Biros, G.: A boundary integral method for simulating the dynamics of inextensible vesicles suspended in a viscous fluid in 2D. J. Comput. Phys. 228, 2334–2353 (2009)

    Article  MATH  MathSciNet  Google Scholar 

  24. Veerapaneni, S.K., Young, Y.-N., Vlahovska, P.M., Blawzdziewicz, J.: Dynamics of a compound vesicle in shear flow. Phys. Rev. Lett. 106, 158103 (2011)

    Article  Google Scholar 

  25. Yang, X., Zhang, X., Li, Z., He, G.-W.: A smoothing technique for discrete delta functions with application to immersed boundary method in moving boundary simulations. J. Comput. Phys. 228, 7821–7836 (2009)

    Article  MATH  MathSciNet  Google Scholar 

  26. Zhou, H., Pozrikidis, C.: Deformation of liquid capsules with incompressible interfaces in simple shear flow. J. Fluid Mech. 283, 175–200 (1995)

    Article  MATH  Google Scholar 

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Acknowledgments

The authors would like to thank two anonymous referees for their valuable comments and suggestions that helped to improve the quality of the paper.

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Correspondence to Suh-Yuh Yang.

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Po-Wen Hsieh was partially supported by the National Science Council of Taiwan under the Grant NSC 102-2115-M-033-007-MY2.

Ming-Chih Lai was partially supported by the National Science Council of Taiwan under the Grant NSC 101-2115-M-009-014-MY3.

Suh-Yuh Yang was partially supported by the National Science Council of Taiwan under the Grant NSC 101-2115-M-008-008-MY2.

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Hsieh, PW., Lai, MC., Yang, SY. et al. An Unconditionally Energy Stable Penalty Immersed Boundary Method for Simulating the Dynamics of an Inextensible Interface Interacting with a Solid Particle. J Sci Comput 64, 289–316 (2015). https://doi.org/10.1007/s10915-014-9933-y

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  • DOI: https://doi.org/10.1007/s10915-014-9933-y

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