Abstract
Being able to collect rich morphological information of brain, structural magnetic resonance imaging (MRI) is popularly applied to computer-aided diagnosis of Alzheimer’s disease (AD). Conventional methods for AD diagnosis are labor-intensive and typically depend on a substantial amount of hand-crafted features. In this paper, we propose a novel framework of convolutional neural network that aims at identifying AD or normal control, and mild cognitive impairment or normal control. The centerpiece of our method are pseudo-3D block and expanded global context block which are integrated into residual block of backbone in a cascaded manner. To be specific, we transfer pseudo-3D block in the video feature representation to extract structural MRI features. Besides, we extend the 2D global context block to the 3D model which can effectively combine the features and capture the latent associations, while simulate the global context in each dimension of structural MRI results. With the preprocessed structural MRI used as the input of the overall network, our method is capable of constructing a latent representation with multiple residual blocks to promote the classification accuracy. Intrinsically, our method reduces the complexity of conventional 3D convolutional network model applied to AD diagnosis and improves the classification accuracy over the baseline. Furthermore, our network can fully take advantage of the deep 3D convolutional neural network for automatic feature extraction and representation, and thus avoids the limitation of low processing efficiency caused by the preprocessing procedure in which a specific area needs to be annotated in advance. Experimental results on Alzheimer’s Disease Neuroimaging Initiative database indicate that our proposed method reports accuracy of 89.29% on the AD/NC and 87.57% on the mild cognitive impairment/NC, whilst our approach achieves the 0.5% improvement of accuracy compared with the backbone.
Similar content being viewed by others
References
Akkus Z, Galimzianova A, Hoogi A, Rubin D, Erickson B (2017) Deep learning for brain mri segmentation: State of the art and future directions. J Digit Imaging 30(4):449–459, 06
Cao Y, Xu J, Lin S, Wei F, Hu H (2019) Gcnet: Non-local networks meet squeeze-excitation networks and beyond. In: 2019 IEEE/CVF International conference on computer vision workshop (ICCVW), pp 1971–1980
Cheng D, Liu M, Fu J, Wang Y (2017) Classification of mr brain images by combination of multi-cnns for ad diagnosis. In: Society of photo-optical instrumentation engineers society of photo-optical instrumentation engineers (SPIE) conference series, page 1042042, 07
Escudero J, Zajicek JP, Ifeachor E (2011) Machine learning classification of mri features of alzheimer’s disease and mild cognitive impairment subjects to reduce the sample size in clinical trials. In: 2011 Annual international conference of the IEEE engineering in medicine and biology society, pp 7957–7960
Falahati F, Westman E, Simmons A (2014) Multivariate data analysis and machine learning in alzheimer’s disease with a focus on structural magnetic resonance imaging. J Alzheimer’s Disease 41(3):685–708,04
Gao XW, Hui R, Tian Z (2017) Classification of ct brain images based on deep learning networks. Comput Methods Prog Biomed 138:49–56
He K, Zhang X, Ren S, Sun J (2016) Deep residual learning for image recognition. In: 2016 IEEE Conference on computer vision and pattern recognition (CVPR), pp 770–778
Hosseini-Asl E, Keynton R, El-Baz A (2016) Alzheimer’s disease diagnostics by adaptation of 3d convolutional network. In: 2016 IEEE International conference on image processing (ICIP), pp 126–130
Hu J, Shen L, Sun G (2018) Squeeze-and-excitation networks. In: 2018 IEEE/CVF Conference on computer vision and pattern recognition, pp 7132–7141
Jack C, Bernstein M, Fox N, Thompson P, Alexander G, Harvey D, Borowski B, Britson P, Whitwell J, Ward C, Dale A, Felmlee J, Gunter J, Hill D, Killiany R, Schuff N, Fox-Bosetti S, Lin C, Studholme C, Weiner M (2008) The alzheimer’s disease neuroimaging initiative (adni): Mri methods. J Magnetic Resonance Imaging 27:685–691, 05
Jin D, Xu J, Zhao K, Hu F, Yang Z, Liu B, Jiang T, Liu Y (2019) Attention-based 3d convolutional network for alzheimer’s disease diagnosis and biomarkers exploration. In: 2019 IEEE 16Th international symposium on biomedical imaging (ISBI 2019), pp 1047–1051
Khvostikov A, Aderghal K, Benois-Pineau J, Krylov A, Catheline G (2018) 3d cnn-based classification using smri and md-dti images for alzheimer disease studies. arXiv: Computer Vision and Pattern Recognition 01
Klöppel S, Stonnington C, Chu C, Draganski B, Scahill R, Rohrer J, Fox N, Jack C, Ashburner J, Frackowiak R (2008) Automatic classification of mr scans in alzheimer’s disease. Brain 131(3):681–689, 04
Lian C, Liu M, Zhang J, Shen D (2020) Hierarchical fully convolutional network for joint atrophy localization and alzheimer’s disease diagnosis using structural mri. IEEE Trans Pattern Anal Mach Intell 42(4):880–893
Liu M, Cheng D, Yan W (2018) Alzheimers Disease Neuroimaging Initiative: Classification of alzheimer’s disease by combination of convolutional and recurrent neural networks using fdg-pet images. Frontiers in Neuroinformatics 12
Liu S, Liu S, Cai W, Pujol S, Kikinis R, Dagan D, Feng F (2014) Early diagnosis of alzheimer’s disease with deep learning. 1015–1018, 04
Liu S, Song Y, Cai W, Pujol S, Kikinis R, Wang X, Feng D (2013) Multifold bayesian kernelization in alzheimer’s diagnosis 16,303–310, 09
Liu M, Zhang J, Adeli E, Shen D (2019) Joint classification and regression via deep multi-task multi-channel learning for alzheimer’s disease diagnosis. IEEE Trans Biomed Eng 66(5):1195–1206
Liu M, Zhang D, Shen D (2014) Hierarchical fusion of features and classifier decisions for alzheimer’s disease diagnosis. Hum Brain Mapp 35:1305–1319, 04
Moradi E, Pepe A, Gaser C, Huttunen H, Tohka J (2015) Machine learning framework for early mri-based alzheimer’s conversion prediction in mci subjects. NeuroImage 104:398–412
Ortiz A, Munilla J, Gorriz J, Ramírez J (2016) Ensembles of deep learning architectures for the early diagnosis of the alzheimer’s disease. Int J Neural Syst 26:03
Qiu Z, Yao T, Mei T (2017) Learning spatio-temporal representation with pseudo-3d residual networks. In: 2017 IEEE International conference on computer vision (ICCV), pp 5534–5542
Risacher S, Saykin A, West J, Shen L, Firpi H, Mcdonald B (2009) Baseline mri predictors of conversion from mci to probable ad in the adni cohort. Current Alzheimer Res 6:347–361, 08
Sarraf S, Tofighi G (2016) Classification of alzheimer’s disease structural MRI data by deep learning convolutional neural networks. arXiv:1607.06583
Suk H-I, Lee S-W, Shen D (2017) Deep ensemble learning of sparse regression models for brain disease diagnosis. Med Image Anal 37:101–113
Varol E, Gaonkar B, Erus G, Schultz R, Davatzikos C (2012) Feature ranking based nested support vector machine ensemble for medical image classification. In: 2012 9Th IEEE international symposium on biomedical imaging (ISBI), pp 146–149
Wang X, Girshick R, Gupta A, He K (2018) Non-local neural networks. In: 2018 IEEE/CVF Conference on computer vision and pattern recognition, pp 7794–7803
Wang S, Wang H, Shen Y, Wang X (2018) Automatic recognition of mild cognitive impairment and alzheimers disease using ensemble based 3d densely connected convolutional networks. In: 2018 17Th IEEE international conference on machine learning and applications (ICMLA), pp 517–523
Ye DH, Pohl KM, Davatzikos C (2011) Semi-supervised pattern classification: Application to structural mri of alzheimer’s disease. In: 2011 International workshop on pattern recognition in neuroimaging, pp 1–4
Zhang C, Adeli E, Zhou T, Chen X, Shen D (2018) Multi-layer multi-view classification for alzheimer’s disease diagnosis. AAAI Conf Artif Intell 2018:4406–4413,02
Zhang D, Shen D (2012) Alzheimer’s Disease Neuroimaging Initiative. Predicting future clinical changes of mci patients using longitudinal and multimodal biomarkers. PLOS ONE 7(3):e33182,03
Zhang D, Wang Y, Zhou L, Yuan H, Shen D (2011) Multimodal classification of alzheimer’s disease and mild cognitive impairment. NeuroImage 55 (3):856–867
Zhang J, Yu J, Tao D (2018) Local deep-feature alignment for unsupervised dimension reduction. IEEE Trans Image Process 27(5):2420–2432
Zhou T, Liu M, Thung K, Shen D (2019) Latent representation learning for alzheimer’s disease diagnosis with incomplete multi-modality neuroimaging and genetic data. IEEE Trans Med Imaging 38(10):2411–2422
Zhu X, Suk H-I, Wang L, Lee S-W, Shen D (2017) A novel relational regularization feature selection method for joint regression and classification in ad diagnosis. Med Image Anal 38:205–214
Acknowledgements
This work is supported by the National Natural Science Foundation of China under Grant 61971273, Grant 61877038, Grant 61702251, Grant 61703096, the Key Research and Development Program in Shaanxi Province of China under Grant 2021GY-032 and the Fundamental Research Funds for the Central Universities under Grant GK202003077, Grant GK202105006. The authors would like to gratefully thank NVIDIA Corporationfor for the support of the Titan XP GPU used in our work.
Author information
Authors and Affiliations
Contributions
Conceptualization, Z.P.; Methodology, M.M. and M.G.; Software, Z.P. and Y.G.; Supervision, M.M.; Resources, M.G. and C.L.; Data curation, Y.G. and Y.C.; Writing—original draft, Z.P. and Y.G.; Writing—review and editing, M.M., C.L. and J.L. All authors have read and agreed to the published version of the manuscript.
Corresponding author
Ethics declarations
Conflict of Interests
The authors declare that they have no conflict of interest.
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
About this article
Cite this article
Pei, Z., Gou, Y., Ma, M. et al. Alzheimer’s disease diagnosis based on long-range dependency mechanism using convolutional neural network. Multimed Tools Appl 81, 36053–36068 (2022). https://doi.org/10.1007/s11042-021-11279-z
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11042-021-11279-z