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AMRNN: attended multi-task recurrent neural networks for dynamic illness severity prediction

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Abstract

Illness severity prediction (ISP) is crucial for caregivers in the intensive care unit (ICU) while saving the life of patients. Existing ISP methods fail to provide sufficient evidence for the time-critical decision making in the dynamic changing environment. Moreover, the correlated temporal features in multivariate time-series are rarely be considered in existing machine learning-based ISP models. Therefore, in this paper, we propose a novel interpretable analysis framework which simultaneously analyses organ systems differentiated based on the pathological and physiological evidence to predict illness severity of patients in ICU. It not only timely but also intuitively reflects the critical conditions of patients for caregivers. In particular, we develop a deep interpretable learning model, namely AMRNN, which is based on the Multi-task RNNs and Attention Mechanism. Physiological features of each organ system in multivariate time series are learned by a single Long-Short Term Memory unit as a dedicated task. To utilize the functional and temporal relationships among organ systems, we use a shared LSTM task to exploit correlations between different learning tasks for further performance improvement. Real-world clinical datasets (MIMIC-III) are used for conducting extensive experiments, and our method is compared with the existing state-of-the-art methods. The experimental results demonstrated that our proposed approach outperforms those methods and suggests a promising way of evidence-based decision support.

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Notes

  1. https://myhealthrecord.gov.au

  2. https://mimic.physionet.org/

References

  1. Abdulnabi, A.H., Wang, G., Lu, J., Jia, K.: Multi-task cnn model for attribute prediction. IEEE Trans. Multimedia 17(11), 1949–1959 (2015)

    Article  Google Scholar 

  2. Aczon, M., Ledbetter, D., Ho, L., Gunny, A., Flynn, A., Williams, J., Wetzel, R.: Dynamic mortality risk predictions in pediatric critical care using recurrent neural networks. arXiv:1701.06675 (2017)

  3. Binder, H., Blettner, M.: Big data in medical science—a biostatistical view: Part 21 of a series on evaluation of scientific publications. Dtsch. Arztebl. Int. 112(9), 137 (2015)

    Google Scholar 

  4. Bouch, D.C., Thompson, J.P.: Severity scoring systems in the critically ill. Continuing Education in Anaesthesia. Critical Care & Pain 8(5), 181–185 (2008)

    Google Scholar 

  5. Chen, W., Wang, S., Long, G., Yao, L., Sheng, Q.Z., Li, X.: Dynamic illness severity prediction via multi-task rnns for intensive care unit. In: 2018 IEEE International Conference on Data Mining (ICDM), pp. 917–922. IEEE (2018)

  6. Chen, W., Wang, S., Zhang, X., Yao, L., Yue, L., Qian, B., Li, X.: Eeg-based motion intention recognition via multi-task rnns. In: Proceedings of the 2018 SIAM International Conference on Data Mining, pp. 279–287. SIAM (2018)

  7. Elman, J.L.: Finding structure in time. Cogn. Sci. 14(2), 179–211 (1990)

    Article  Google Scholar 

  8. Gehring, J., Auli, M., Grangier, D., Yarats, D., Dauphin, Y.N.: Convolutional sequence to sequence learning. In: Proceedings of the 34th International Conference on Machine Learning-Volume 70, pp. 1243–1252. JMLR. org (2017)

  9. Graves, A.: Generating sequences with recurrent neural networks. arXiv:1308.0850 (2013)

  10. Harutyunyan, H., Khachatrian, H., Kale, D.C., Steeg, G.V., Galstyan, A.: Multitask learning and benchmarking with clinical time series data. arXiv:1703.07771 (2017)

  11. Hochreiter, S., Schmidhuber, J.: Long short-term memory. Neural computation (1997)

  12. Johnson, A.E., Pollard, T.J., Shen, L., Li-wei, H.L., Feng, M., Ghassemi, M., Moody, B., Szolovits, P., Celi, L.A., Mark, R.G.: Mimic-iii, a freely accessible critical care database. Sci Data 3, 160035 (2016)

    Article  Google Scholar 

  13. Kingma, D.P., Ba, J.: Adam: A method for stochastic optimization. arXiv:1412.6980 (2014)

  14. Knaus, W.A., Wagner, D.P., Draper, E.A., Zimmerman, J.E., Bergner, M., Bastos, P.G., Sirio, C.A., Murphy, D.J., Lotring, T., Damiano, A., et al.: The apache iii prognostic system: risk prediction of hospital mortality for critically iii hospitalized adults. Chest 100(6), 1619–1636 (1991)

    Article  Google Scholar 

  15. Le Gall, J.R., Lemeshow, S., Saulnier, F.: A new simplified acute physiology score (saps ii) based on a european/north american multicenter study. Jama 270(24), 2957–2963 (1993)

    Article  Google Scholar 

  16. Lipton, Z.C., Kale, D.C., Wetzel, R.: Modeling missing data in clinical time series with rnns. Machine Learning for Healthcare (2016)

  17. Nguyen, P., Tran, T., Venkatesh, S.: Deep learning to attend to risk in icu. arXiv:1707.05010 (2017)

  18. Nie, L., Zhang, L., Yang, Y., Wang, M., Hong, R., Chua, T.S.: Beyond doctors: Future health prediction from multimedia and multimodal observations. In: Proceedings of the 23rd ACM International Conference on Multimedia, pp. 591–600. ACM (2015)

  19. Parikh, A.P., Täckström, O., Das, D., Uszkoreit, J.: A decomposable attention model for natural language inference. arXiv:1606.01933(2016)

  20. Pham, T., Tran, T., Phung, D., Venkatesh, S.: Deepcare: a deep dynamic memory model for predictive medicine. In: Pacific-Asia Conference on Knowledge Discovery and Data Mining, pp. 30–41. Springer (2016)

  21. Purushotham, S., Meng, C., Che, Z., Liu, Y.: Benchmark of deep learning models on large healthcare mimic datasets. arXiv:1710.08531 (2017)

  22. Rocktäschel, T., Grefenstette, E., Hermann, K.M., Kočiskỳ, T., Blunsom, P.: Reasoning about entailment with neural attention. arXiv:1509.06664 (2015)

  23. Shann, F., Pearson, G., Slater, A., Wilkinson, K.: Paediatric index of mortality (pim): a mortality prediction model for children in intensive care. Intensive Care Med. 23(2), 201–207 (1997)

    Article  Google Scholar 

  24. Vaswani, A., Shazeer, N., Parmar, N., Uszkoreit, J., Jones, L., Gomez, A.N., Kaiser, Ł., Polosukhin, I.: Attention is All You Need. In: Advances in Neural Information Processing Systems, pp. 5998–6008 (2017)

  25. Verga, P., Strubell, E., McCallum, A.: Simultaneously self-attending to all mentions for full-abstract biological relation extraction. arXiv:1802.10569 (2018)

  26. Vincent, J., Moreno, R., Takala, J., Willatts, S., De Mendonça, A., Bruining, H., Reinhart, C., Suter, P., Thijs, L.: The sofa score to describe organ dysfunction/failure. on behalf of the working group on sepsis-related problems of the european society of intensive care medicine. Intensive Care Med. 22(7), 707–710 (1996)

    Article  Google Scholar 

  27. Wang, S., Chang, X., Li, X., Long, G., Yao, L., Sheng, Q.Z.: Diagnosis code assignment using sparsity-based disease correlation embedding. IEEE Trans. Knowl. Data Eng. 28(12), 3191–3202 (2016)

    Article  Google Scholar 

  28. Yim, J., Jung, H., Yoo, B., Choi, C., Park, D., Kim, J.: Rotating your face using multi-task deep neural network. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 676–684 (2015)

  29. Zhang, T., Ghanem, B., Liu, S., Ahuja, N.: Robust visual tracking via structured multi-task sparse learning. Int. J. Comput. Vis. 101(2), 367–383 (2013)

    Article  MathSciNet  Google Scholar 

  30. Zhou, J., Yuan, L., Liu, J., Ye, J.: A multi-task learning formulation for predicting disease progression. In: Proceedings of the 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 814–822. ACM (2011)

  31. Zhou, J., Liu, J., Narayan, V.A., Ye, J.: Modeling disease progression via fused sparse group lasso. In: Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 1095–1103. ACM (2012)

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Correspondence to Weitong Chen.

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This article belongs to the Topical Collection: Special Issue on Application-Driven Knowledge Acquisition

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Chen, W., Long, G., Yao, L. et al. AMRNN: attended multi-task recurrent neural networks for dynamic illness severity prediction. World Wide Web 23, 2753–2770 (2020). https://doi.org/10.1007/s11280-019-00720-x

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