Skip to main content

Advertisement

Log in

Monte Carlo likelihood estimation of mixed-effects state space models with application to HIV dynamics

  • Published:
Journal of Systems Science and Complexity Aims and scope Submit manuscript

Abstract

The statistical inference for generalized mixed-effects state space models (MESSM) are investigated when the random effects are unknown. Two filtering algorithms are designed both of which are based on mixture Kalman filter. These algorithms are particularly useful when the longitudinal measurements are sparse. The authors also propose a globally convergent algorithm for parameter estimation of MESSM which can be used to locate the initial value of parameters for local while more efficient algorithms. Simulation examples are carried out which validate the efficacy of the proposed approaches. A data set from the clinical trial is investigated and a smaller mean square error is achieved compared to the existing results in literatures.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Liu D C, Lu T, Niu X F, et al., Mixed-effects state-space models for analysis of longitudinal dynamic systems, Biometrics, 2011, 67(2): 476–485.

    Article  MathSciNet  MATH  Google Scholar 

  2. Chen R and Liu J S, Mixture Kalman filter, Journal of the Royal Statistical Society, Series B, 2000, 62: 493–508.

    Google Scholar 

  3. Gilks W R and Berzuini C, Following a moving target-Monte Carlo inference for dynamic Baysian models, Journal of the Royal Statistical Society, Series B, 2001, 63: 127–146.

    MathSciNet  MATH  Google Scholar 

  4. Khan Z, Balch T, and Dellaert F, MCMC based particle filtering for tracking a variable number of interacting targets, IEEE Transactions on Pattern Analysis and Machine Intelligence, 2005, 27: 1805–1819.

    Article  Google Scholar 

  5. Gilks W R, Richardson S, and Spiegelhalter D J, Markov Chain Monte Carlo in practice, Chapman and Hall/CRC, 1996.

    MATH  Google Scholar 

  6. West M, Approximating posterior distributions by mixtures, Journal of the Royal Statistical Society, Series B, 1993a, 55: 409–422.

    MATH  Google Scholar 

  7. West M, Mixture models, Monte Carlo, Bayesian updating and dynamic models, Ed. by Newton J H, Computing Science and Statistics: Proceedings of the 24th Symposium on the Interface, Interface Foundation of North America, Fairfax Station, Virginia, 1993b, 325–333.

  8. Liu J S and West M, Combined parameter and state estimation in simulation-based filtering, Sequential Monte Carlo Methods in Practice editted by Doucet A, de Freitas, and Gourdon N, 2001, 197–223.

    Google Scholar 

  9. Gordon N J, Salmond D J, and Smith A F M, Novel approach to nonlinear/non-Gaussian bayesian state estimation, IEEE Proceedings F, 1993, 140: 107–113.

    Google Scholar 

  10. Hürzeler M and Künsch H R, Approximating and Maximising the likelihood for a General state space model, Sequential Monte Carlo Methods in Practice, Eds. by Doucet A, de Freitas, and Gourdon N, 2001, 159–173.

    Book  MATH  Google Scholar 

  11. Pang S K, Li J, and Godsill S J, Models and algorithms for detection and tracking of coordinated groups, Proceedings of the IEEE Aerospace Conference, 2008.

    Google Scholar 

  12. Pang S K, Li J, and Godsill S J, Detection and tracking of coordinatred groups, IEEE Transactions on Aerospace and Electronic Systems, 2011, 47: 472–502.

    Article  Google Scholar 

  13. Wu H L, Ding A A, and de Gruttola V, Estimation of HIV dynamic parameters, Statistics in Medicine, 1998, 17: 2463–2485.

    Article  Google Scholar 

  14. Huang Y X, Liu D C, and Wu H L, Hierarchical bayesian methods for estimation of parameters in a longitudinal HIV dynamic system, Biometrics, 2006, 62: 413–423.

    Article  MathSciNet  MATH  Google Scholar 

  15. Harvey A C, Forecasting Structural Time Series Models and the Kalman Filter, Cambridge University Press, London, 1989.

    Google Scholar 

  16. Durbin J and Koopman S J, Time Series Analysis by State Space Methods, 2th Edition, Oxford Press, London, 2012.

    Book  MATH  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jie Zhou.

Additional information

This research was supported by the National Natural Science Foundation of China under Grant No. 71271165.

This paper was recommended for publication by Editor YU Zhangsheng.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhou, J., Tang, A. & Feng, H. Monte Carlo likelihood estimation of mixed-effects state space models with application to HIV dynamics. J Syst Sci Complex 29, 1160–1176 (2016). https://doi.org/10.1007/s11424-016-4158-9

Download citation

  • Received:

  • Revised:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11424-016-4158-9

Keywords

Navigation