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Biomedical entity linking based on less labeled data

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In this work, we perform a joint learning model to construct a fine-grained biomedical entity and relation linking. We adopt a probabilistic a probabilistic logic network to align the entities in biomedical text to the concepts in the knowledge base. And we utilize the dispersion degree of standard deviation to evaluate feature distribution and select those tuples with distinguishing features for interaction relationship classifying. Then we rank the candidate entity-relation triples to obtain the linking result.

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References

  1. Collier N, Park H S, Ogata N, Tateishi Y, Nobata C, Ohta T, Sekimizu T, Imai H, Ibushi K, Tsujii J I. The GENIA project: corpus-based knowledge acquisition and information extraction from genome research papers. In: Proceeding of the 9th Conference on European Chapter of the Association for Computational Linguistics. 1999, 271–272

  2. Gupta Vivek, Bharti P, Nokhiz P, Karnick H. SumPubMed: summarization dataset of PubMed scientific articles. In: Proceeding of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing: Student Research Workshop. 2021, 292–303

  3. Hardoon D R, Szedmak S, Shawe-Taylor J. Canonical correlation analysis: an overview with application to learning methods. Neural Computation, 2004, 16(12): 2639–2664

    Article  MATH  Google Scholar 

  4. Kartsaklis D, Pilehvar M T, Collier N. Mapping text to knowledge graph entities using multi-sense LSTMs. In: Proceeding of the 2018 Conference on Empirical Methods in Natural Language Processing. 2018, 1959–1970

  5. Zhou H, Ning S, Liu Z, Lang C, Liu Z, Lei B. Knowledge-enhanced biomedical named entity recognition and normalization: application to proteins and genes. BMC Bioinformatics, 2020, 21(1): 35

    Article  Google Scholar 

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Acknowledgements

This research was supported by the National Natural Science Foundation of China (62072084, 62072086, 62172082), the National Defense Basic Scientific Research Program of China (JCKY2018205C012), and the Fundamental Research Funds for the Central Universities (N2116008).

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Correspondence to Yu Hu.

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Hu, Y., Shen, D., Nie, T. et al. Biomedical entity linking based on less labeled data. Front. Comput. Sci. 16, 163343 (2022). https://doi.org/10.1007/s11704-022-1192-8

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  • DOI: https://doi.org/10.1007/s11704-022-1192-8

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