Skip to main content
Log in

Organisms and their place in biology

  • Published:
Theory in Biosciences Aims and scope Submit manuscript

Summary

In this paper we review the concept of organism analysing the main ideas related to it in the context of present biological theories. The discussion is focused and developed according to four key issues: individuality, organisation, autonomy and reproduction. Once these basic connections are established, a spectrum of possible entities that fall under the label ‘organism’ is looked over, with special emphasis on limit or controversial cases. The aim is to see whether they all share a set of common features and, if they do, why it is so difficult to reach a consensus on the definition of the term. Finally, we try to release somehow the tension between those hierarchical schemes proposed to account for life as a global phenomenon and those approaches that take organisms as the central target of (theoretical) biology, suggesting a possible middle-ground solution open for further research.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Boden, M. (1999) Is metabolism necessary? Brit. J. Phil. Sci. 50: 231–248.

    Article  Google Scholar 

  • Brooks, D. (2000) The nature of the organism: Life has a life of its own. In: J. L Chandler; G. Van der Vijver (eds.) Closure: Emergent organizations and their dynamics. Annals of the New York Academy of Science. pp. 257–265.

  • Buss, L. (1987) The evolution of individuality. Princeton University Press, Princeton NJ.

    Google Scholar 

  • Christensen, W. D.; Hooker, C. A. (1998) From cell to scientist: Toward an organisational theory of life and mind. In: J. Bigelow (ed.) Our Cultural Heritage. Australian Academy of Humanities, University House, Canberra, Australia. pp. 275–326.

    Google Scholar 

  • Dawkins, R. (1976) The selfish gene, Oxford University Press, New York.

    Google Scholar 

  • -- (1982) The extended phenotype, Oxford University Press.

  • Eldredge, N.; Salthe, S. (1984) Hierarchy and evolution. In: R. Dawkins; M. Ridley (eds) Oxford surveys in evolutionary biology. Oxford University Press, Oxford. pp. 184–208.

    Google Scholar 

  • Emmeche, C. (2000) Closure, function, emergence, semiosis and life: the same idea? In: J. L. Chandler; G. Van der Vijver (eds) Closure, emergent organizations and their dynamics. Annals of the New York Academy of Science. pp. 187–197.

  • Etxeberria, A. (2000) Artificial evolution: Creativity and the possible. In: M. Bedau; J. McCaskill; N. Packard; S. Rasmussen (eds) Artificial Life VII, MIT Press. pp. 555–562.

  • Etxeberria, A.; Ibañez, J. (1999) Semiotics of the artificial: The self of self-reproducing systems in cellular automata. Semiotica 127 (1/4): 295–320.

    Google Scholar 

  • Fontana, W.; Wagner, G.; Buss, L. (1995) Beyond Digital Naturalism. In: C. Langton (ed) Artificial life. An overview. MIT Press. pp. 211–227.

  • Gould, S. J. (1987) A most ingenious paradox. In: The Flamingo’s Smile. Reflections in Natural History. W. W. Norton & Company.

  • —— (1997) Full house: the spread of excellence from Plato to Darwin. Three Rivers Press, New York

    Google Scholar 

  • Grene, M. (1987) Hierarchies in biology. American Scientist 75: 504–509.

    Google Scholar 

  • Hull, D. L. (1980) Individuality and selection. Annual review of Ecological Systems 11: 311–332.

    Article  Google Scholar 

  • Lawrence, J. G. (1999) Gene transfer and minimal genome size. In: Size limits of very small microorganisms, Proceedings of a Workshop. National Academy of Sciences. pp. 32–38.

  • Lewontin, R. (1983) The organism as the subject and object of evolution. Scientia 118: 65–82.

    Google Scholar 

  • —— (1992) Genotype and phenotype. In E. F. Keller; E. A. LLoyd (eds.) Keywords in evolutionary biology, Harvard University Press, Cambridge MA. pp. 137–144.

    Google Scholar 

  • Margulis, L.; Schwartz, K. V. (1998) Five kingdoms: An illustrated guide to the phyla of life on earth, W H Freeman & Co.

  • Maturana, H.; Varela, F. (1984) El árbol del conocimiento. Edit. Universitaria, Santiago de Chile.

    Google Scholar 

  • Maynard Smith, J.; Szathmáry, E. (1995) The major transitions of evolution. W. H. Freeman, Oxford.

    Google Scholar 

  • Mayr, E. (1985) How biology differs from the physical sciences. In: Depew, D.; B. Weber (eds.) Evolution at a crossroads: The new biology and the new philosophy of science. MIT Press, Cambridge, MA.

    Google Scholar 

  • McMullin, B.; Varela, F. (1997) Rediscovering computational autopoiesis. In: P. Husbands; I. Harvey (eds) Fourth European conference on artificial life. MIT Press. pp. 38–47

  • Moreno, A.; Etxeberria, A. (1992) Self-reproduction and representation: the continuity between biological and cognitive phenomena. Uroboros 2 (1): 131–151.

    Google Scholar 

  • Moreno, A.; Ruiz-Mirazo, K. (1999) Metabolism and the problem of its universalization. Bio-Systems 41: 45–61.

    Google Scholar 

  • McShea, D. (1996) Metazoan complexity and evolution: Is there a trend? Evolution 50 (2): 477–492.

    Article  Google Scholar 

  • Pattee, H. H. (1969) How does a molecule become a message? Developmental Biology Supplement 3: 1–16.

    Google Scholar 

  • —— (1973) The physical basis and origin of hierarchical control. In: H. H. Pattee (ed.) Hierarchy theory: The challenge of complex systems. Braziller, New York.

    Google Scholar 

  • —— (1977) Dynamic and linguistic modes of complex systems. Int. J. General Systems, 3: 259–266.

    Article  Google Scholar 

  • Polanyi, M. (1968) Life’s irreducible structure, Science 160: 1308–1312.

    Article  PubMed  CAS  Google Scholar 

  • Rashevsky (1960) Theoretical biophysics (3rd edition) Dover Publications, New York.

    Google Scholar 

  • Rosen, R. (1991) Life itself. Columbia University Press, New York.

    Google Scholar 

  • Ruiz-Mirazo, K.; Moreno, A. (1998) Autonomy and emergence: how systems become agents through the generation of functional constraints. Acta Polytechnica Scandinavica (Special Issue, Farre G. L. & Oksala T. (eds.)) Ma 91: 273–282.

    Google Scholar 

  • Ruiz-Mirazo, K.; Moreno, A. (Forthcoming) Searching for the roots of autonomy. The natural and artifical paradigms revisited. Special Issue of CC-AI on autonomy.

  • Ruse, M. (ed.) (1998) Philosophy of biology. Prometheus Books, New York.

    Google Scholar 

  • Sober, E.; Wilson, D. S. (1998) Unto others: The evolution of altruism. Harvard Univerity Press, Cambridge MA.

    Google Scholar 

  • Szathmáry, E.; Maynard Smith, J. (1997) From replicators to reproducers: the first major transitions leading to life. Journal of Theoretical Biology 187: 555–571.

    Article  PubMed  Google Scholar 

  • Stanley, S. M. (1979) Macroevolution. Freeman & Co., San Francisco.

    Google Scholar 

  • Stelreny, K.; Griffiths, P. E. (1999) Sex and death. An introduction to philosophy of biology. The University of Chicago Press, Chicago.

    Google Scholar 

  • Uexküll, J. von (1982) [1940] The theory of meaning. Semiotica 42 (1): 25–87.

    Article  Google Scholar 

  • Varela, F. (1979) Principles of biological autonomy. Elsevier North Holland, New York.

    Google Scholar 

  • Weber, B.; Depew, D. (2000, to appear) Developmental Systems, Darwinian Evolution, and the Unity of Science. In: Paul Griffiths; Susan Oyama (eds) “Cycles of Contingency”. MIT Press.

  • Wilson, R. A. (1999) The individual in biology and psychology. In: V. G. Hardcastle (ed.) Where biology meets psychology. Philosophical Essays. MIT Press, Cambridge MA. pp. 355–374.

    Google Scholar 

  • Wimsatt, W. (1974) Complexity and organization. In: K. F. Schaffner; R. S. Cohen (eds.) PSA 1972. Reidel Publishing Company, Dordrecht. pp. 67–86.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ruiz-Mirazo, K., Etxeberria, A., Moreno, A. et al. Organisms and their place in biology. Theory Biosci. 119, 209–233 (2000). https://doi.org/10.1007/s12064-000-0017-1

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12064-000-0017-1

Key words

Navigation