CRISPR has revolutionized biomedical and bioengineering research as a programmable genome engineering technology. Computational tools have been integral throughout the discovery of CRISPR biology and the development of CRISPR-based technologies that hold promise to solve many challenges ahead.
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Genome-wide CRISPR off-target prediction and optimization using RNA-DNA interaction fingerprints
Nature Communications Open Access 18 November 2023
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Acknowledgements
The authors thank X. Lin for useful discussion. S.S. and L.S.Q. acknowledge support from National Science Foundation CAREER award (to L.S.Q., award no. 2046650). L.S.Q. also acknowledges support from National Science Foundation NSF2026: EAGER (award no. 2033387), National Institutes of Health National Cancer Institute (grant no. 1R01CA266470-01A1, 1R21CA270609-01) and 4D Nucleome (grant no. 1U01DK127405-03), and Stanford Innovative Medicines Accelerator. L.S.Q. is a Chan Zuckerberg Biohub Investigator.
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L.S.Q. is a founder of Epicrispr Biotechnologies and a scientific advisor of Epicrispr Biotechnologies and Laboratory of Genomics Research.
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Shang, S., Cai, X.S. & Qi, L.S. Computation empowers CRISPR discovery and technology. Nat Comput Sci 2, 533–535 (2022). https://doi.org/10.1038/s43588-022-00321-1
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DOI: https://doi.org/10.1038/s43588-022-00321-1
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