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Title: In Situ Methods, Infrastructures, and Applications on High Performance Computing Platforms

Journal Article · · Computer Graphics Forum
DOI:https://doi.org/10.1111/cgf.12930· OSTI ID:1595010
 [1];  [2];  [3];  [4];  [1];  [2];  [5];  [1];  [6];  [7];  [8]
  1. Kitware, Inc., Clifton Park, NY (United States)
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  3. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  4. Univ. of Oregon, Eugene, OR (United States)
  5. Sandia National Lab. (SNL-CA), Livermore, CA (United States)
  6. Argonne National Lab. (ANL), Argonne, IL (United States)
  7. Intelligent Light, USA, Rutherford, NJ (United States)
  8. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

The considerable interest in the high performance computing (HPC) community regarding analyzing and visualization data without first writing to disk, i.e., in situ processing, is due to several factors. First is an I/O cost savings, where data is analyzed /visualized while being generated, without first storing to a filesystem. Second is the potential for increased accuracy, where fine temporal sampling of transient analysis might expose some complex behavior missed in coarse temporal sampling. Third is the ability to use all available resources, CPU’s and accelerators, in the computation of analysis products. This STAR paper brings together researchers, developers and practitioners using in situ methods in extreme-scale HPC with the goal to present existing methods, infrastructures, and a range of computational science and engineering applications using in situ analysis and visualization.

Research Organization:
Kitware, Inc., Clifton Park, NY (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Nuclear Energy (NE); USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR)
Grant/Contract Number:
SC0012037; AC02-05CH11231
OSTI ID:
1595010
Alternate ID(s):
OSTI ID: 1439995
Journal Information:
Computer Graphics Forum, Vol. 35, Issue 3; ISSN 0167-7055
Publisher:
WileyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 83 works
Citation information provided by
Web of Science

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Data Reduction Techniques for Simulation, Visualization and Data Analysis: Survey on Scientific Data Reduction Techniques journal March 2018
A decade of particle-based scientific visualization journal March 2019
Scalable In situ Analysis of Molecular Dynamics Simulations
  • Malakar, Preeti; Knight, Christopher; Munson, Todd
  • Proceedings of the In Situ Infrastructures on Enabling Extreme-Scale Analysis and Visualization - ISAV'17 https://doi.org/10.1145/3144769.3144772
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In situ data-driven adaptive sampling for large-scale simulation data summarization
  • Biswas, Ayan; Dutta, Soumya; Pulido, Jesus
  • Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization - ISAV '18 https://doi.org/10.1145/3281464.3281467
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A Violently Tornadic Supercell Thunderstorm Simulation Spanning a Quarter-Trillion Grid Volumes: Computational Challenges, I/O Framework, and Visualizations of Tornadogenesis journal September 2019