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ChemXSeer: a digital library and data repository for chemical kinetics

Published: 09 November 2007 Publication History

Abstract

In this paper, we describe the ChemXSeer system that hosts data and scholarly articles related to chemical kinetics. Domain scientists have different needs that are not served by general search engines. ChemXSeer enables chemists (and others) to search for chemical formulae. As part of the project, we have designed TableSeer that extracts data from PDF documents and enters them into a database. Scientists also submit the raw data obtained as results of their experiments to the data repository. Metadata is associated with the data and can be searched. A mediated system allows searching across data and documents using the same search query interface using keyword queries.

References

[1]
Liu, Y., Bai, K., Mitra, P., Giles, C. L. (2007) "TableSeer: Automatic Table Metadata Extraction and Searching in Digital Libraries" ACM IEEE Joint Conference on Digital Libraries (JCDL'07), Vancouver, British Columbia, Canada, 2007
[2]
Sun, B., Tan, Q., Mitra, P., Giles, C.L. (2007) "Extraction and Search of Chemical Formulae in Text Documents on the Web" The 16 th International World Wide Web Conference (WWW'07), Banff, Alberta, Canada, 2007
[3]
Tan, Q., Zhuang, Z., Mitra, P., Giles, C.L. (2007) "Designing Efficient Sampling Techniques to Detect Webpage Updates" The 16 th International World Wide Web Conference (WWW'07), (Poster Track), Banff, Alberta, Canada, 2007, 2 pages
[4]
Zhao, Q., Mitra, P., Giles, C. L. (2007) "Image Annotation by Hierarchical Mapping of Features" The 16 th International World Wide Web Conference (WWW'07), (Poster Track), Banff, Alberta, Canada, 2007, 2 pages
[5]
Liu, Y., Mitra, P., Giles, C. L. (2007) "Automatic Searching of Tables in Digital Libraries" The 16 th International World Wide Web Conference (WWW'07), (Poster Track), Banff, Alberta, Canada, 2007, 2 pages
[6]
Lu, X., Wang, J. Z., Mitra, P., Giles, C. L. (2007) "Deriving Knowledge from Figures for Digital Libraries" The 16 th International World Wide Web Conference (WWW'07), (Poster Track), Banff, Alberta, Canada, 2007, 2 pages
[7]
Bolelli, L., Lu, X., Liu, Y., Jaiswal, A., Bai, K., Councill, I., Mitra, P., Wang, J.Z., Mueller, K., Kubicki, J., Garrison, B., Bandstra J., Giles, C.L. (2007) "ChemXSeer: A Chemistry Web Portal for Scientific Literature and Datasets" Open Repositories Conference, San Antonio, Texas, 2007
[8]
Lu, X., Mitra, P., Wang J. Z., Giles C. L. (2006) "Automatic Categorization of Figures in Scientific Documents" ACM and IEEE Joint Conference on Digital Libraries, Chapel Hill, NC, June, 11-15, 2006.
[9]
Jaiswal, A., Giles, C. L., Mitra, P., Wang, J. Z. (2006) "An Architecture for Creating Collaborative Semantically Capable Scientific Data Sharing Infrastructures" 8 th International Workshop on Web Information and Data Management (WIDM2006), Arlington, VA, 2006.
[10]
Liu, Y., Mitra, P., Giles, C. L. Bai, K. (2006) "Automatic Extraction of Table Metadata from PDF Documents (Poster)" ACM and IEEE Joint Conference on Digital Libraries, Chapel Hill, NC, June, 11-15, 2006.
[11]
Isaac G. Councill, C. Lee Giles, Ernesto Di Iorio, Marco Gori, Marco Maggini, Augusto Pucci: Towards Next Generation CiteSeer: A Flexible Architecture for Digital Library Deployment. ECDL 2006: 111--122
[12]
C. Lee Giles: The Future of CiteSeer: CiteSeer x . PKDD 2006: 2
[13]
Huajing Li, Isaac G. Councill, Wang-Chien Lee, C. Lee Giles: CiteSeerx: an architecture and web service design for an academic document search engine. WWW 2006: 883--884
[14]
The Rexa Digital Library. Available at http://rexa.info/ on August 31 st, 2007.
[15]
Google Scholar. Available at http://scholar.google.com on August 31 st, 2007.

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    cover image ACM Conferences
    CIMS '07: Proceedings of the ACM first workshop on CyberInfrastructure: information management in eScience
    November 2007
    80 pages
    ISBN:9781595938312
    DOI:10.1145/1317353
    Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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    Published: 09 November 2007

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    Author Tags

    1. chemistry informatics
    2. cyberinfrastructure
    3. database
    4. digital library

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    • (2023)An Efficient Framework for Algorithmic Metadata Extraction over Scholarly Documents Using Deep Neural NetworksSN Computer Science10.1007/s42979-023-01776-34:4Online publication date: 20-Apr-2023
    • (2021)Seer-Dock: A General-Purpose Dockerized Scholarly Document Collection and Management FrameworkProceedings of the 44th International ACM SIGIR Conference on Research and Development in Information Retrieval10.1145/3404835.3463251(2485-2490)Online publication date: 11-Jul-2021
    • (2021)Extraction and Search of Relevant Chemical Documents from the WebProceedings of First International Conference on Mathematical Modeling and Computational Science10.1007/978-981-33-4389-4_24(251-262)Online publication date: 5-May-2021
    • (2019)Bibliometric-enhanced information retrievalScientometrics10.1007/s11192-019-03025-y119:1(257-277)Online publication date: 1-Apr-2019
    • (2018)AI Cognition in Searching for Relevant Knowledge from Scholarly Big Data, Using a Multi-layer Perceptron and Recurrent Convolutional Neural Network ModelCompanion Proceedings of the The Web Conference 201810.1145/3184558.3186334(251-258)Online publication date: 23-Apr-2018
    • (2018)DS4A: Deep Search System for Algorithms from Full-Text Scholarly Big Data2018 IEEE International Conference on Data Mining Workshops (ICDMW)10.1109/ICDMW.2018.00186(1308-1315)Online publication date: Nov-2018
    • (2018)A Relation Aware Search Engine for Materials ScienceIntegrating Materials and Manufacturing Innovation10.1007/s40192-017-0105-47:1(1-11)Online publication date: 9-Jan-2018
    • (2017)Detecting Target Text Related to Algorithmic Efficiency in Scholarly Big Data Using Recurrent Convolutional Neural Network ModelDigital Libraries: Data, Information, and Knowledge for Digital Lives10.1007/978-3-319-70232-2_3(30-40)Online publication date: 3-Nov-2017
    • (2016)Role of Knowledge Management in Development and Lifecycle Management of BiopharmaceuticalsPharmaceutical Research10.1007/s11095-016-2043-934:2(243-256)Online publication date: 26-Oct-2016
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