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An island model for high-dimensional genomes using phylogenetic speciation and species barcoding

Published:08 July 2009Publication History

ABSTRACT

A new speciation method for parallel evolutionary computation is presented, designed specifically to handle high-dimensional data. Taking inspiration from the natural sciences, the Phylogenetic Relations Island Speciation Model (PRISM) uses common ancestry and a novel species barcoding system to detect new species and move them to separate islands. Simulation experiments were performed on Multidimensional Knapsack Problems with different fitness landscapes requiring 100-dimensional genomes. PRISM's performance with various parameter settings and on the various landscapes is analyzed and preliminary results show that PRISM can consistently produce optimal or near-optimal solutions, outperforming the standard Genetic Algorithm and Island Model in all the performed experiments.

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            cover image ACM Conferences
            GECCO '09: Proceedings of the 11th Annual conference on Genetic and evolutionary computation
            July 2009
            2036 pages
            ISBN:9781605583259
            DOI:10.1145/1569901

            Copyright © 2009 ACM

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            Publication History

            • Published: 8 July 2009

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