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Accelerating science gateway development with Web 2.0 and Swift

Published: 02 August 2010 Publication History

Abstract

A Science Gateway is a computational web portal that enables scientists to run scientific simulations, data analysis, and visualization through their web browsers. The major problem of building a science gateway on TeraGrid is how to deploy scientific applications rapidly on computational resources and expose these applications as web services to scientists. In this paper we propose a novel science application framework that can greatly accelerate the development cycle of science gateway systems. This framework enables science gateway developers to import their domain-specific scientific workflow scripts and generate Web 2.0 gadgets for running these application workflows and visualizing the output from workflow executions without writing any web related code. By assembling these application-specific gadgets and some common gadgets predefined in the framework for workflow management, developers can easily set up a customized computational science gateway to meet community requirements. We demonstrate the utility of the framework with an example from computational biochemistry.

References

[1]
Wilkins-Diehr, N., Gannon, D., Klimeck, G., Oster, S., Pamidighantam, S., 2008. TeraGrid Science Gateways and Their Impact on Science, IEEE Computer 41(11):32--41, Nov 2008.
[2]
Kandaswamy, G., Fang, L., Huang, Y., Shirasuna, S., Marru, S., and Gannon, D. 2006. Building Web Services for Scientific Grid Applications. IBM Journal of Research and Development 50(2--3), 2006.
[3]
Krishnan, L. and Stearn, B., et al. 2006. Opal: Simple Web Services Wrappers for Scientific Applications. IEEE International Conference on Web Services (ICWS 2006), Sep 18--22, Chicago.
[4]
Oinn, T., Addis, M. et al. 2004. Taverna: A tool for the composition and enactment of bioinformatics workflows. Bioinformatics Journal, 20(17), 3045--3054.
[5]
Zhao, Y., Hategan M., Clifford, B., Foster, I., vonLaszewski, G., Raicu, I., Stef-Praun, T. and Wilde, M. 2007. Swift: Fast, Reliable, Loosely Coupled Parallel Computation. In Proc. IEEE International Workshop on Scientific Workflows 2007, pp. 199--206.
[6]
OpenSocial Specification, http://www.opensocial.org/
[7]
Wilde, M., Foster, I., Iskra, K., Beckman, P., Zhang, Z., Espinosa, A., Hategan, M., Clifford, B., Raicu, I. 2009. Parallel Scripting for Applications at the Petascale and Beyond, IEEE Computer 42(11):50--61, Nov. 2009.
[8]
JSR-168 portlet specification http://jcp.org/aboutJava/communityprocess/final/jsr168/.
[9]
Feller, M., Foster, I., and Martin, S. 2007. "GT4 GRAM: A Functionality and Performance Study", TeraGrid Conference 2007.
[10]
Allcock, W. (editor), GridFTP: Protocol Extensions to FTP for the Grid. GFD-20, April 2003. http://www.ggf.org/documents/GFD.20.pdf.
[11]
Hocky, G., Wilde, M., DeBartolo, J., Hategan, M., Foster, I., Sosnick, T. R., Freed, K. 2009. Towards Petascale ab initio Protein Folding through Parallel Scripting, preprint, ANL/MCS-P1645-0609, Argonne National Laboratory.
[12]
Mobyle, http://bioweb2.pasteur.fr/projects/mobyle.
[13]
JSON-RPC, http://jabsorb.org.
[14]
PyMol, www.pymol.org/.
[15]
Swift Coaster, http://www.ci.uchicago.edu/swift/guides/userguide.php.
[16]
Thain, D., Tannenbaum, T., and Livny, M. 2003. "Condor and the Grid", in Fran Berman, Anthony J. G. Hey, Geoffrey Fox, editors, Grid Computing: Making The Global Infrastructure a Reality, John Wiley, 2003. ISBN: 0-470-85319-0.
[17]
Shindig http://shindig.apache.org.
[18]
Welch, V., Barlow, J., Basney, J. and Marcusiu, D. 2006. AAA model to support science gateways with community accounts. Concurrency and Computation: Practice and Experience 19(6) 893--904.
[19]
Basney, J., Humphrey, M. and Welch, V. 2005. The MyProxy Online Credential Repository. Software: Practice and Experience, Volume 35, Issue 9, July 2005, pages 801--816.
[20]
Nicklous, M., and Hepper, S. 2008. JSR 286: Portlet specification 2.0. http://www.jcp.org/en/jsr/detail?id=286.

Cited By

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  • (2016)Scientific WorkflowsACM Computing Surveys10.1145/301242949:4(1-39)Online publication date: 12-Dec-2016
  • (2015) WorkWays : interacting with scientific workflows Concurrency and Computation: Practice and Experience10.1002/cpe.352527:16(4377-4397)Online publication date: 21-May-2015
  • (2014)Automating Deployment of Customized Scientific Data Analytic Environments on CloudsProceedings of the 2014 IEEE Fourth International Conference on Big Data and Cloud Computing10.1109/BDCloud.2014.22(41-48)Online publication date: 3-Dec-2014
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      cover image ACM Other conferences
      TG '10: Proceedings of the 2010 TeraGrid Conference
      August 2010
      177 pages
      ISBN:9781605588186
      DOI:10.1145/1838574
      Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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      Published: 02 August 2010

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      Author Tags

      1. OpenSocial
      2. Web2.0
      3. science gateway
      4. workflow

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      • Carnegie Mellon University
      TG '10: TeraGrid 2010
      August 2 - 5, 2010
      Pennsylvania, Pittsburgh

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      Cited By

      View all
      • (2016)Scientific WorkflowsACM Computing Surveys10.1145/301242949:4(1-39)Online publication date: 12-Dec-2016
      • (2015) WorkWays : interacting with scientific workflows Concurrency and Computation: Practice and Experience10.1002/cpe.352527:16(4377-4397)Online publication date: 21-May-2015
      • (2014)Automating Deployment of Customized Scientific Data Analytic Environments on CloudsProceedings of the 2014 IEEE Fourth International Conference on Big Data and Cloud Computing10.1109/BDCloud.2014.22(41-48)Online publication date: 3-Dec-2014
      • (2014)The WorkWays Problem Solving EnvironmentProcedia Computer Science10.1016/j.procs.2014.05.21329(2284-2294)Online publication date: 2014
      • (2012)WorkWaysProceedings of the 2012 IEEE 8th International Conference on E-Science (e-Science)10.1109/eScience.2012.6404428(1-8)Online publication date: 8-Oct-2012
      • (2011)Distributed web security for science gatewaysProceedings of the 2011 ACM workshop on Gateway computing environments10.1145/2110486.2110489(13-20)Online publication date: 18-Nov-2011
      • (2011)A solution looking for lots of problemsProceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery10.1145/2016741.2016788(1-7)Online publication date: 18-Jul-2011
      • (2011)An OAuth service for issuing certificates to science gateways for TeraGrid usersProceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery10.1145/2016741.2016776(1-6)Online publication date: 18-Jul-2011
      • (2011)Creating a Cloud-based Life Science GatewayProceedings of the 2011 IEEE Seventh International Conference on eScience10.1109/eScience.2011.16(55-61)Online publication date: 5-Dec-2011

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