ABSTRACT
Interleukin-1 receptor-associated kinases (IRAKs) are important in TIR-mediated signal transduction. Although IRAK proteins are structurally similar, recent biochemical studies have shown that each IRAK member plays a non-redundant role in TLR/IL-1R signaling. In addition insects have 1 IRAK homolog, Pelle, which is related to the vertebrate IRAK members. We have carried out the sequence based phylogenetic analysis, to understand the molecular evolution of IRAK members and the relation of vertebrate IRAK members with insect homolog. Our study on available IRAK sequences suggested that gene duplication events have occurred in the lineage leading to vertebrates and Tube protein from insects is a homolog of IRAK4 unlike anticipated protein Pelle. Furthermore, our functional analysis suggests that the potential divergence sites have been constrained by strong purifying selection among IRAK members. 3D protein structures revealed some of the unique features of the DD and KD shared by all the IRAK members. Additionally our NMA analysis predicted the domain motions in the KD. This study highlighted the molecular evolution, functional divergence and structural features of the IRAK subfamily that may provide a starting point for further experimental investigations.
- Martin, M. U. and Wesche, H. Summary and comparison of the signaling mechanisms of the Toll/interleukin-1 receptor family. Biochim Biophys Acta, 1592, 3 (Nov 11 2002), 265--280.Google Scholar
- Cao, Z., Henzel, W. J. and Gao, X. IRAK: a kinase associated with the interleukin-1 receptor. Science, 271, 5252 (Feb 23 1996), 1128--1131.Google Scholar
- Wang, Z., Liu, J., Sudom, A., Ayres, M., Li, S., Wesche, H., Powers, J. P. and Walker, N. P. Crystal structures of IRAK-4 kinase in complex with inhibitors: a serine/threonine kinase with tyrosine as a gatekeeper. Structure, 14, 12 (Dec 2006), 1835--1844.Google ScholarCross Ref
- Towb, P., Sun, H. and Wasserman, S. A. Tube Is an IRAK-4 homolog in a Toll pathway adapted for development and immunity. J Innate Immun, 1, 4 2009), 309--321.Google ScholarCross Ref
Index Terms
- Phylogenetic and functional divergence analysis of vertebrate IRAK family members
Recommendations
In silico 3-D structure prediction and molecular docking studies of inosine monophosphate dehydrogenase from Plasmodium falciparum
Display Omitted Growing resistance in malarial parasites, particularly in Plasmodium falciparum needs for development of novel drug targets.Inosine monophosphate dehydrogenase (IMPDH) is an important target for antimalarial drug discovery.A homology ...
Computational analysis, structural modeling and ligand binding site prediction of Plasmodium falciparum 1-deoxy-d-xylulose-5-phosphate synthase
Display Omitted Plasmodium falciparum 1-deoxy-d-xylulose-5-phosphate synthase (DXP synthase) is predicted to be stable and residues forming pyrimidine binding pocket are evolutionary conserved.Comparative homology based modeling of DXP synthase is ...
Molecular characterization, modeling and docking of CYP107CB2 from Bacillus lehensis G1, an alkaliphile
Display Omitted The putative gene CYP107CB2 from Bacillus lehensis G1 was classified into cytochrome P450 superfamily.CYP107CB2 is likely to interact with vitamin D3, 25-hydroxyvitamin D3 and 1α-hydroxyvitamin D3 as they were proximally located to the ...
Comments