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Protein structural motifs search in protein data base

Published: 22 June 2012 Publication History

Abstract

This research develops approaches and strategies in Bioinformatics with explicit attention to applications of Computational Biology. The plan is to develop structural motifs retrieval into the protein database (PDB). The aim here is of exploiting the Generalized Hough Transform for the comparison and the search of structural similarity. Note that, if the searched structure is just a component of a protein (like a structural motif or a domain) the same method supports the detection and the statistical distribution of these components, possibly answering questions of permanence among different species and phylogenetic questions related to biological homology.

References

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  • (2013)Comparison of GHT-Based Approaches to Structural Motif RetrievalProceedings of the ICIAP 2013 International Workshops on New Trends in Image Analysis and Processing — ICIAP 2013 - Volume 815810.1007/978-3-642-41190-8_38(356-362)Online publication date: 9-Sep-2013
  1. Protein structural motifs search in protein data base

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    cover image ACM Other conferences
    CompSysTech '12: Proceedings of the 13th International Conference on Computer Systems and Technologies
    June 2012
    440 pages
    ISBN:9781450311939
    DOI:10.1145/2383276
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    Published: 22 June 2012

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    Author Tags

    1. generalized hough transform
    2. protein domain retrieval
    3. protein motif retrieval
    4. protein structure comparison

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    • (2013)Comparison of GHT-Based Approaches to Structural Motif RetrievalProceedings of the ICIAP 2013 International Workshops on New Trends in Image Analysis and Processing — ICIAP 2013 - Volume 815810.1007/978-3-642-41190-8_38(356-362)Online publication date: 9-Sep-2013

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