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Can CAD cure cancer?

Published: 29 May 2013 Publication History

Abstract

Eukaryotic cells have complex regulatory systems that sense adversity (e.g. DNA damage, heat shock, external death-induction signals) and respond by invoking programmed cell-death or apoptosis. Cancer cells have evolved the ability to thwart such sensory information and associated regulation. As biologists begin to understand cells in circuit-like terms, we can also begin to derive and simulate druggable targets of cellular networks that cause a cancerous cell to kill its self. Towards this goal, we have performed preliminary experiments that test the impact of siRNA (RNA silencing) on diverse cellular signaling pathways, at unprecedented single-cell resolution. We propose ways in which a CAD system can process such data to automatically derive drug targets.

References

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D. Hanahan, R. A. Weinberg, "Hallmarks of cancer: the next generation," Cell, vol. 144(5) March 4 2011, pp.646--674.
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KEGG Database http://www.genome.jp/kegg/pathway.html)
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L. J. P. van der Maaten, G. E. Hinton, "Visualizing High-Dimensional Data Using t-SNE," Journal of Machine Learning Research vol. 9, Nov. 2008, pp. 2579--2605.
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J. Moffat, D. M. Sabatini, "Building Mammalian Signalling Pathways with RNAi Screens," Nature Reviews Molecular Cell Biology, vol. 7, March 2006, pp. 177--187.
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F. Vandin, J. Upfal, B. J. Raphael, De Novo discovery of mutated driver pathways in Cancer, Genome Research, Feb 22(2), 2012.

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  • (2019)Automated Segmentation of Pigmented Skin Lesions Images for Smartphone Applications2019 International Semiconductor Conference (CAS)10.1109/SMICND.2019.8923938(107-110)Online publication date: Oct-2019

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cover image ACM Conferences
DAC '13: Proceedings of the 50th Annual Design Automation Conference
May 2013
1285 pages
ISBN:9781450320719
DOI:10.1145/2463209
Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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Published: 29 May 2013

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  • (2019)Automated Segmentation of Pigmented Skin Lesions Images for Smartphone Applications2019 International Semiconductor Conference (CAS)10.1109/SMICND.2019.8923938(107-110)Online publication date: Oct-2019

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