U Deok Seo
ABSTRACT
In this paper, we suggest a method to update the adjacent amino acids for a deformed channel in a flexible protein molecule. Based on the topological events in the Delaunay tetrahedra of the molecule, we classify the possible cases to update the adjacent amino acid set.
- Kim, B., Lee, J. E., Kim, Y. J., and Kim, K.-J. 2014. GPU Accelerated Finding of Channels and Tunnels for a Protein Molecule. International Journal of Parallel Programming, DOI=http://link.springer.com/article/10.1007/s10766-014-0331-8, (online)Google Scholar
- Gavrilova, M. L. and Rokne, J. 2003. Updating the topology of the dynamic Voronoi diagram for spheres in Euclidean d-dimensional space. Computer Aided Geometric Design, 20. 231--243. Google ScholarDigital Library
Index Terms
- Updating channel adjacent amino acids for a flexible protein molecule
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