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Phenotyping Intensive Care Unit Patients Using Temporal Abstractions and Temporal Pattern Matching

Published: 02 October 2016 Publication History

Abstract

Adequate reutilization of routinely generated clinical data is a key component of what has been called a learning healthcare system, a system that is able to generate enough data that can be then analyzed to generate new insights into what works and what doesn't. However, the reutilization of electronic clinical data is not trivial since the quality of such data is usually low or unknown. Several tools have been developed to extract structured data from electronic health records (EHRs)--such as natural language processing--but, to this day, most researchers and quality experts rely on manual data extraction from EHRs. Here we assess the accuracy of ClincalTime, a temporal abstraction and query system designed easily identify patient cohorts based on patterns of clinical time intervals.

References

[1]
D. Capurro, M. Barbe, C. Daza, J. Santa María, J. Trincado, and I. Gomez. Clinicaltime: Identification of patients with acute kidney injury using temporal abstractions and temporal pattern matching. AMIA Summits on Translational Science Proceedings, 2015:46, 2015.
[2]
M. Saeed, M. Villarroel, A. T. Reisner, G. Clifford, L.-W. Lehman, G. Moody, T. Heldt, T. H. Kyaw, B. Moody, and R. G. Mark. Multiparameter intelligent monitoring in intensive care ii (MIMIC-II): a public-access intensive care unit database. Critical Care Medicine, 39(5):952, 2011.

Cited By

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  • (2019)Characterization of Drug Use Patterns Using Process Mining and Temporal Abstraction Digital PhenotypingBusiness Process Management Workshops10.1007/978-3-030-11641-5_15(187-198)Online publication date: 29-Jan-2019
  • (2018)Ontop-temporalProceedings of the 27th ACM International Conference on Information and Knowledge Management10.1145/3269206.3269230(1927-1930)Online publication date: 17-Oct-2018

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Published In

cover image ACM Conferences
BCB '16: Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics
October 2016
675 pages
ISBN:9781450342254
DOI:10.1145/2975167
Permission to make digital or hard copies of part or all of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for third-party components of this work must be honored. For all other uses, contact the Owner/Author.

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Association for Computing Machinery

New York, NY, United States

Publication History

Published: 02 October 2016

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Author Tags

  1. Electronic Health Records
  2. Phenotyping
  3. Temporal Abstraction

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Overall Acceptance Rate 254 of 885 submissions, 29%

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Cited By

View all
  • (2019)Characterization of Drug Use Patterns Using Process Mining and Temporal Abstraction Digital PhenotypingBusiness Process Management Workshops10.1007/978-3-030-11641-5_15(187-198)Online publication date: 29-Jan-2019
  • (2018)Ontop-temporalProceedings of the 27th ACM International Conference on Information and Knowledge Management10.1145/3269206.3269230(1927-1930)Online publication date: 17-Oct-2018

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