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Experimenting with Clojure on Extracting Medication Information from Clinical Narratives

Published: 24 October 2018 Publication History

Abstract

The path towards electronic healthcare records is nonetheless not free of challenges including the large amount of clinical information buried in narrative content. Medication information is one of the most important types of clinical data in electronic healthcare records. It is critical for healthcare safety and quality, as well as for clinical research to have such information identified correctly. Natural language processing (NLP) is essential to phenotyping the medication data. However, recognizing medication patterns based on general NLP techniques fail short to identify such patterns with great accuracy even if they were trained with relevant clinical treebanks or corpuses. This article describes how Clojure and OpenNLP API can be used to identify medication patterns and train the clinical narrative chuncker to accurately identify given medication patterns.

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  1. Experimenting with Clojure on Extracting Medication Information from Clinical Narratives

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    cover image ACM Other conferences
    BDIOT '18: Proceedings of the 2018 2nd International Conference on Big Data and Internet of Things
    October 2018
    217 pages
    ISBN:9781450365192
    DOI:10.1145/3289430
    Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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    • Deakin University

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    Association for Computing Machinery

    New York, NY, United States

    Publication History

    Published: 24 October 2018

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    Author Tags

    1. Clinical Narratives
    2. Clojure
    3. Medication Information Extraction
    4. OpenNLP

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