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A BiLSTM-CRF Method to Chinese Electronic Medical Record Named Entity Recognition

Published: 21 December 2018 Publication History

Abstract

With the application of electronic medical records in medical field, more and more people are paying attention to how to use these data efficiently. In this paper, the BiLSTM-CRF model is applied to Chinese electronic medical records to recognize related named entities in these records. For the characteristics of Chinese electronic medical records, firstly, the one-hot vector of each word is obtained in units of sentences. Secondly, map one-hot vector to a low-dimensional dense word vector. Thirdly, word vector is used as the input of the BiLSTM layer to achieve automatic extraction of sentence features. Finally, the CRF layer performs sequence-level labeling of sentences. In addition, drug dictionary and post-correction rules are added to correct the segmentation error of entity boundary, to improve recognition accuracy of related named entities. The F1 value of this method on a given test data set is 87.68%.

References

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Huang Z, Xu W, Yu K. Bidirectional LSTM-CRF models for sequence tagging{J}.Computer Science, 2015.
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Lample G, Ballesteros M, Subramanian S, et al. Neural Architectures for Named Entity Recognition{C}. Proceedings of NAACL-HLT. 2016: 260--270.
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Dong C, Zhang J, Zong C, et al. Character-Based LSTM-CRF with Radical-Level Features for Chinese Named Entity Recognition{C}. International Conference on Computer Processing of Oriental Languages. Springer International Publishing, 2016: 239--250.
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  • (2025)Aspect-Based Sentiment Analysis Through Graph Convolutional Networks and Joint Task LearningInformation10.3390/info1603020116:3(201)Online publication date: 5-Mar-2025
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  • (2024)Online biomedical named entities recognition by data and knowledge-driven modelArtificial Intelligence in Medicine10.1016/j.artmed.2024.102813(102813)Online publication date: Feb-2024
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cover image ACM Other conferences
ACAI '18: Proceedings of the 2018 International Conference on Algorithms, Computing and Artificial Intelligence
December 2018
460 pages
ISBN:9781450366250
DOI:10.1145/3302425
Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

In-Cooperation

  • The Hong Kong Polytechnic: The Hong Kong Polytechnic University
  • City University of Hong Kong: City University of Hong Kong

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Association for Computing Machinery

New York, NY, United States

Publication History

Published: 21 December 2018

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Author Tags

  1. BiLSTM-CRF
  2. Chinese electronic medical record
  3. drug dictionary
  4. named entity
  5. post-correction rule

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  • Research-article
  • Research
  • Refereed limited

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ACAI 2018

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ACAI '18 Paper Acceptance Rate 76 of 192 submissions, 40%;
Overall Acceptance Rate 173 of 395 submissions, 44%

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Cited By

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  • (2025)Aspect-Based Sentiment Analysis Through Graph Convolutional Networks and Joint Task LearningInformation10.3390/info1603020116:3(201)Online publication date: 5-Mar-2025
  • (2024)A joint entity Relation Extraction method for document level Traditional Chinese Medicine textsArtificial Intelligence in Medicine10.1016/j.artmed.2024.102915154(102915)Online publication date: Aug-2024
  • (2024)Online biomedical named entities recognition by data and knowledge-driven modelArtificial Intelligence in Medicine10.1016/j.artmed.2024.102813(102813)Online publication date: Feb-2024
  • (2024)Named Entity Recognition Using EHealth-BiLSTM-CRF Combine with Multi-head Self-attention for Chinese Medical InformationWeb Information Systems and Applications10.1007/978-981-97-7707-5_37(451-462)Online publication date: 11-Sep-2024
  • (2023)Named Entity Recognition of Diabetes Online Health Community Data Using Multiple Machine Learning ModelsBioengineering10.3390/bioengineering1006065910:6(659)Online publication date: 29-May-2023
  • (2023)Chinese Clinical Named Entity Recognition From Electronic Medical Records Based on Multisemantic Features by Using Robustly Optimized Bidirectional Encoder Representation From Transformers Pretraining Approach Whole Word Masking and Convolutional Neural Networks: Model Development and ValidationJMIR Medical Informatics10.2196/4459711(e44597)Online publication date: 10-May-2023
  • (2023)MeDict-GP: An Accurate Entity Recognition Model Combining Medical Domain Knowledge and Globalization IdeasProceedings of the 2023 9th International Conference on Computing and Artificial Intelligence10.1145/3594315.3594360(477-483)Online publication date: 17-Mar-2023
  • (2023)A study on the application of named entity recognition in resume parsingThird International Conference on Intelligent Computing and Human-Computer Interaction (ICHCI 2022)10.1117/12.2655918(60)Online publication date: 13-Jan-2023
  • (2022)A Chinese named entity approach for character semantic enhancementProceedings of the 2022 4th International Conference on Robotics, Intelligent Control and Artificial Intelligence10.1145/3584376.3584475(553-558)Online publication date: 16-Dec-2022
  • (2022)Medical Q&A Statement NER Based on ECA Attention Mechanism and Lexical Enhancement2022 IEEE 8th International Conference on Computer and Communications (ICCC)10.1109/ICCC56324.2022.10065631(1495-1500)Online publication date: 9-Dec-2022
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