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Genome-wide Association of APOE and FOXO3A for human longevity: A Systematic Review

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Published:13 January 2020Publication History

ABSTRACT

The use of systems biology and bioinformatics to deal with the complexity inherent in aging research has played a major role. Genome-wide association studies (GWAS) is a means of detecting longevity-associated with genetic variants. The numbers of genetic variants found to associate with longevity and the most convincing human longevity genes today are APOE and FOXO3A which have frequently been associated with longevity. We conducted a systematic review to identify studies that contain the relevant data. Odds ratios (OR) and 95% confidence interval (CI) and P<0.05 for significant tests were used to figure out the genomic association between the genes and human longevity. There are a positive association of rs2802288 (OR = 1.08, 95% CI = 0.93-1.25, p = 0.03) and rs2764264 (OR = 1.25, 95% CI = 0.90-1.73, P = 0.01) between FOXO3A polymorphisms and human longevity on pooled analysis, specifically with male longevity but there is no association with rs13220810 polymorphism (OR = 0.96, 95% CI = 0.80-1.16, P = 0.31). Rs7412 polymorphism of APOE indicates a significant association which was more likely with human longevity (OR = 1.30, 95% CI = 0.50-2.83, P = 0.01) and rs429358 polymorphism of APOE was less likely to occurred for longevity with a negative significant association (OR = 0.50, 95% CI = 0.37-0.67, P = 0.01). It was confirmed that there are an association between FOXO3A and APOE with human longevity on polymorphisms. Further genotyping should be done to verify more potential markers or polymorphisms related to human longevity.

References

  1. Aladdin H. Shadyab, Charles Kooperberg. 2016. Replication of Genome-Wide Association Study Findings of Longevity in White, African American, and Hispanic women. Journals of Gerontology. Doi: 10.1093/gerona/glw198.Google ScholarGoogle Scholar
  2. Alberto Montesanto. 2012. Epidemiological, genetic and epigenetic aspects of the research on healthy ageing and longevity. Biomedical center.Google ScholarGoogle Scholar
  3. Almut Nebel, Rabea Kleindorp, Make Caliebe. 2011. A genome-wide association study confirms APOE as the major gene influencing survival in long-lived individuals. Doi: 10.1016/j.mad.2011.06.008.Google ScholarGoogle Scholar
  4. Capurso, C. et al. 2004. Interleukin 6-174G/C promoter gene polymorphism in centenarians: no evidence of association with human longevity or interaction with apolipoprotein E alleles. 39, 1109--1114. Doi:10.1016/j.exger.2004.03.037Google ScholarGoogle Scholar
  5. Chiara Viviani Anselmi, Alberto Malovini, Roberta Roncarati, 2009. Association of the FOXO3A Locus with Extreme Longevity in a Southern Italian Centenarian Study. Doi: 10.1089/rej.2008.0827.Google ScholarGoogle Scholar
  6. Christensen K, Johnson TE, Vaupel JW. 2006. The quest for genetic determinants of human longevity: challenges and insights. Nat Rev Genet. 7(6):436--448. Doi: 10.1038/nrg1871Google ScholarGoogle ScholarCross RefCross Ref
  7. Deelen J, Beekman M, Uh HW, et al. 2011. Genome-wide association study identifies a single major locus contributing to survival into old age; the APOE locus revisited. Aging Cell. 2011; 10(4):686--698. Doi: 10.1111/j.1474-9726.2011.00705.xGoogle ScholarGoogle Scholar
  8. Eden R.Martin et al. 2000. Away at Complex Diseases: Analysis of Single-Nucleotide Polymorphisms around APOE in Alzheimer Disease. Spring er 383--394. https://doi.org/10.1086/303003Google ScholarGoogle Scholar
  9. Elad Ziv Donglei Hu. 2011. Genetic variation in insulin/IGF-1 signaling pathways and longevity. Elsevier. https://doi.org/10.1016/j.arr.2010.09.002Google ScholarGoogle Scholar
  10. Feng, J. et al. 2011. Is APOE &epsiv;3 a favourable factor for the longevity: an association study in Chinese population J. Genet. 90, 343--347. Doi: 10.1007/s12041-011-0075-9Google ScholarGoogle Scholar
  11. Flachsbart F, Caliebe A, Kleindorp R, et al. 2009. Association of FOXO3A variation with human longevity confirmed in German centenarians. Proc Natl Acad Sci USA. 106(8):2700--2705. Doi: 10.1073/pnas.0809594106Google ScholarGoogle ScholarCross RefCross Ref
  12. Guodong Liu, Xiang Liu et al. 2017. APOE gene polymorphism in long-lived individuals from a central China population. https://doi.org/10.1038/s41598-017-03227-5Google ScholarGoogle Scholar
  13. Herskind et al.1996. Springer. The heritability of human longevity: a population-based study of 2872 Danish twin pairs born 1870-1900;97: 319--323Google ScholarGoogle Scholar
  14. Jacob vB. Hjelmborg, Ivan Iachine et al. 2006. Genetic influence on human lifespan and longevity. DOI 10.1007/s00439-006-0144-yGoogle ScholarGoogle Scholar
  15. James W. Vaupel. 2010. Biodemography of human ageing. Nature 25; 464 (7288): 536--44. Doi: 10.1038/nature08984.Google ScholarGoogle Scholar
  16. Joanne M. Murabito et al. 2012. The Search for Longevity and Healthy Aging Genes: Insights from Epidemiological Studies and Samples of Long-Lived Individuals.Google ScholarGoogle Scholar
  17. Johnson, Xiao Dong et al. 2015. Genetic evidence for common pathways in human age-related Diseases. Doi: 10.1111/acel.12362Google ScholarGoogle Scholar
  18. Kuningas M, et al. 2007. Haplotypes in the human FOXO1a and FOXO3a genes: Impact on disease and mortality at old age. Eur J Hum Genet 15:294--301.Google ScholarGoogle ScholarCross RefCross Ref
  19. Li Y, Wang WJ, Cao H, et al. 2009. Genetic association of FOXO1A and FOXO3A with longevity trait in Han Chinese populations. Hum Mol Genet. 18(24):4897--4904. Doi: 10.1093/hmg/ddp459. Epub 2009Google ScholarGoogle ScholarCross RefCross Ref
  20. Linda Broer, Aron S. Buchman et al, 2014. GWAS of longevity in CHARGE consortium. The journals of Geronotology. https://doi.org/10.1093/gerona/glu166Google ScholarGoogle Scholar
  21. Louhija, J., Viitanen, M., Aguero-Torres, H. & Tilvis R. 2001. Survival in Finnish centenarians in relation to apolipoprotein E polymorphism. J. Am. Geriatr. Soc. 49, 1007--1008. Doi:10.1046/j.1532-5415.2001.49199.xGoogle ScholarGoogle ScholarCross RefCross Ref
  22. Mahley RW, Rall SC Jr. 2000. Apolipoprotein E: far more than a lipid transport protein. Annu Rev genomics Hum Genet 1: 507--37. DOI:10.1146/annurev.genom.1.1.507Google ScholarGoogle Scholar
  23. Marian Beekman, Helen Blanche. 2013. Genome-wide linkage analysis for human longevity: Genetics of Healthy Aging Study. Doi: 10.1111/acel.12039.Google ScholarGoogle Scholar
  24. Mette Soerensen. 2014. Association study of FOXO3A SNPs and aging phenotypes in Danish oldest-old individuals. Doi: 10.1111/acel.12295Google ScholarGoogle Scholar
  25. Miriam Capri, Stefano Salvioli. 2006. The Genetics of Human Longevity. Doi: 10.1196/annals.1354.033Google ScholarGoogle Scholar
  26. Rune Jacobsen, Torben Martinussen et al. 2010. Increased effect of the ApoE gene on survival at advanced age in healthy and long-lived Danes: two nationwide cohort studies. Doi: 10.1111/j.1474-9726.2010.00626.xGoogle ScholarGoogle Scholar
  27. Rute Martins, Gordon J. Lithgow2 and Wolfgang. 2015. Long live FOXO: unraveling the role of FOXO proteins in aging and longevity. Doi: 10.1111/acel.12427Google ScholarGoogle Scholar
  28. Schächter, F. et al. 1994. Genetic associations with human longevity at the APOE and ACE loci. Nat. Genet. 6, 29--32. Doi: 10.1038/ng0194-29Google ScholarGoogle ScholarCross RefCross Ref
  29. Soerensen M, Dato S, Christensen K, et al. 2010. Replication of an association of variation in the FOXO3A gene with human longevity using both case-control and longitudinal data. Aging Cell. 9(6):1010--1017. Doi: 10.1111/j.1474-9726.2010.00627.xGoogle ScholarGoogle ScholarCross RefCross Ref
  30. Van der Horse A, Burgering BM et al. 2007. Stressing the role of FOXO proteins in lifespan and disease. Nat Rev Mol Cell Biol. 8(6):440--50. DOI:10.1038/nrm2190Google ScholarGoogle ScholarCross RefCross Ref
  31. Visscher PM, Brown MA et al. 2012. Five years of GWAS discovery. Annu Rev genomics Hum Genet 90 (1): 7--24. Doi: 10.1016/j.ajhg.2011.11.029.Google ScholarGoogle Scholar
  32. Walter et al. 2011. A genome-wide association study of aging Stefan Waltera, b, 1, Gil Atzmonc, d, e, 1, Elsevier Inc.Google ScholarGoogle Scholar
  33. Willcox BJ, Donlon TA, He Q, et al. 2008. FOXO3A genotype is strongly associated with human longevity. Proc Natl Acad Sci U S A; 105(37):13987--13992. Doi: 10.1073/pnas.0801030105.Google ScholarGoogle Scholar
  34. Yi Zeng, Lingguo Cheng et al. 2010. Effects of FOXO Genotypes on Longevity: A Biodemographic Analysis. Doi: 10.1093/gerona/glq156Google ScholarGoogle Scholar

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    • Published in

      cover image ACM Other conferences
      ICBBS '19: Proceedings of the 2019 8th International Conference on Bioinformatics and Biomedical Science
      October 2019
      141 pages
      ISBN:9781450372510
      DOI:10.1145/3369166

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      Publication History

      • Published: 13 January 2020

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