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Identifying Hierarchical Individual Functional Network under Naturalistic Paradigm via Two-stage DBN with Neural Architecture Search

Published: 27 August 2021 Publication History

Abstract

Functional magnetic resonance imaging under naturalistic paradigm (NfMRI) is gaining increasing attraction, as it offers an ecologically-valid condition to understand brain function in real life. Characterizing the hierarchical organization of brain function while taking the nature of fMRI activities under naturalistic condition into account has been a critical issue in identifying naturalistic functional networks. Recent studies have made efforts on characterizing the brain's hierarchical organizations from fMRI data via a variety of deep learning models. However, most of those models have ignored the properties of group-wise consistency and inter-subject difference in brain function under naturalistic paradigm. Another critical issue is how to determine the optimal neural architecture of deep learning models, as manual design of neural architecture is time-consuming and less reliable. To tackle these problems, we proposed a two-stage deep belief network (DBN) with neural architecture search (NAS) combined framework (two-stage NAS-DBN framework) to model both the group-consistent and individual-specific naturalistic functional brain networks. Our results demonstrated that the optimized DBN-based framework can characterize meaningful group-wise and individual-level naturalistic functional networks, which reflected the hierarchical organization of brain function and the properties of brain functional activities under naturalistic paradigm.

References

[1]
L. Ferrarini, "Hierarchical functional modularity in the resting-state human brain," Hum Brain Mapp, vol. 30, no. 7, pp. 2220-31, Jul 2009.https://doi.org/10.1002/hbm.20663
[2]
S. Sonkusare, M. Breakspear, and C. J. T. i. c. s. Guo, "Naturalistic stimuli in neuroscience: Critically acclaimed," vol. 23, no. 8, pp. 699-714, 2019.
[3]
Y. Ren, V. T. Nguyen, L. Guo, and C. C. Guo, "Inter-subject Functional Correlation Reveal a Hierarchical Organization of Extrinsic and Intrinsic Systems in the Brain," Sci Rep, vol. 7, no. 1, p. 10876, Sep 7 2017.https://doi.org/10.1038/s41598-017-11324-8
[4]
C. F. Beckmann, M. Jenkinson, and S. M. Smith, "General multilevel linear modeling for group analysis in FMRI," Neuroimage, vol. 20, no. 2, pp. 1052-63, Oct 2003.https://doi.org/10.1016/S1053-8119(03)00435-X
[5]
V. D. Calhoun and T. Adali, "Unmixing fMRI with independent component analysis - Using ICA to characterize high-dimensional fMRI data in a concise manner," Ieee Engineering in Medicine and Biology Magazine, vol. 25, no. 2, pp. 79-90, Mar-Apr 2006.
[6]
J. L. Lv, "Sparse representation of whole-brain fMRI signals for identification of functional networks," Medical Image Analysis, vol. 20, no. 1, pp. 112-134, Feb 2015.https://doi.org/10.1016/j.media.2014.10.011
[7]
Y. Zhao, "Four-Dimensional Modeling of fMRI Data via Spatio–Temporal Convolutional Neural Networks (ST-CNNs)," IEEE Transactions on Cognitive and Developmental Systems, vol. 12, no. 3, pp. 451-460, 2020.https://doi.org/10.1109/tcds.2019.2916916
[8]
N. Qiang, Q. Dong, Y. Sun, B. Ge, and T. Liu, "Deep Variational Autoencoder for Modeling Functional Brain Networks and ADHD Identification," in2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), 2020, pp. 554-557.
[9]
Y. Zhang, "A Two-Stage Dbn-Based Method to Exploring Functional Brain Networks in Naturalistic Paradigm Fmri," 2019 Ieee 16th International Symposium on Biomedical Imaging (Isbi 2019), pp. 1594-1597, 2019.
[10]
W. Zhang, "Identify Hierarchical Structures from Task-Based fMRI Data via Hybrid Spatiotemporal Neural Architecture Search Net," in Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 (Lecture Notes in Computer Science, 2019, pp. 745-753.
[11]
J. Kennedy and R. Eberhart, "Particle swarm optimization," in Proceedings of ICNN'95 - International Conference on Neural Networks, 1995, vol. 4, pp. 1942-1948 vol.4.
[12]
E. Real, A. Aggarwal, Y. Huang, and Q. V. Le, "Regularized evolution for image classifier architecture search," in Proceedings of the aaai conference on artificial intelligence, 2019, vol. 33, pp. 4780-4789.
[13]
G. E. Hinton, S. Osindero, and Y. W. Teh, "A fast learning algorithm for deep belief nets," Neural Comput, vol. 18, no. 7, pp. 1527-54, Jul 2006.https://doi.org/10.1162/neco.2006.18.7.1527
[14]
W. Zhang, "Experimental Comparisons of Sparse Dictionary Learning and Independent Component Analysis for Brain Network Inference From fMRI Data," IEEE Transactions on Biomedical Engineering, vol. 66, no. 1, pp. 289-299, Jan 2019.https://doi.org/10.1109/Tbme.2018.2831186

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  • (2021)Unsettling transdisciplinary perspectives on sustainability issues: A critical discourse (metadata) cross-case analysisJournal of Psychology in Africa10.1080/14330237.2021.198250531:5(488-494)Online publication date: 30-Oct-2021

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ISICDM 2020: The Fourth International Symposium on Image Computing and Digital Medicine
December 2020
239 pages
ISBN:9781450389686
DOI:10.1145/3451421
Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than the author(s) must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected].

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Published: 27 August 2021

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Author Tags

  1. Naturalistic fMRI
  2. deep belief network
  3. hierarchical organization of brain function
  4. neural architecture search

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  • Refereed limited

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  • The Natural Science Foundation of Shaanxi Province award number(s):,
  • The National Natural Science Foundation of China award number(s):,

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ISICDM 2020

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  • (2021)Unsettling transdisciplinary perspectives on sustainability issues: A critical discourse (metadata) cross-case analysisJournal of Psychology in Africa10.1080/14330237.2021.198250531:5(488-494)Online publication date: 30-Oct-2021

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