Konstantina Koliogeorgi
ABSTRACT
This work proposes a novel dataflow architecture for Smith-Waterman Matrix-fill and Traceback stages, which are at the heart of short-read alignment on NGS data. The FPGA accelerator is coupled with radical software restructuring to widely-used Bowtie2 aligner to deliver end-to-end speedup while preserving accuracy.
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Cross Ref
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Index Terms
- FPGA Acceleration of Short Read Alignment
Index terms have been assigned to the content through auto-classification.
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