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DCNN-based Polyps Segmentation using Colonoscopy images

Published:12 June 2023Publication History

ABSTRACT

Colorectal polyps, which are associated with colorectal cancer, can be detected using a colonoscopy. Using the data from colonoscopy images to segment polyps is crucial in medical practice because it provides critical data for identification and surgery. However, precise segmentation of polyps is difficult due to the following factors: the polyp-bordering mucosa boundary is not sharp, and polyps of the same type differ in texture, size, and color. We propose to use the DeepLabV3+ architecture for image segmentation for medical purposes by examining its segmentation results on colonoscopy images from the datasets Kvasir and CVC-ClinicDB. DeepLabV3+ generates an F1-score of 0.865 for CVC-ClinicDB on an NVIDIA A100 class Cloud-Based GPU. The model is divided into the following parts: an encoder that performs separable convolution on the input map and a decoder that up-samples the data provided by the encoder using transpose convolution. Our approach significantly enhances segmentation accuracy and offers a number of benefits with respect to generality and real-time segmentation efficiency, according to evaluations done quantitatively and qualitatively on the two datasets.

References

  1. Deepak Bhaskar Acharya and Huaming Zhang. 2020. Community Detection Clustering via Gumbel Softmax. SN Computer Science 1, 5 (2020), 262.Google ScholarGoogle ScholarDigital LibraryDigital Library
  2. Deepak Bhaskar Acharya and Huaming Zhang. 2020. Feature Selection and Extraction for Graph Neural Networks. In Proceedings of the 2020 ACM Southeast Conference. 252--255.Google ScholarGoogle ScholarDigital LibraryDigital Library
  3. Deepak Bhaskar Acharya and Huaming Zhang. 2021. Data Points Clustering via Gumbel Softmax. SN Computer Science 2, 4 (2021), 311.Google ScholarGoogle ScholarDigital LibraryDigital Library
  4. Mojtaba Akbari, Majid Mohrekesh, Ebrahim Nasr-Esfahani, SM Reza Soroushmehr, Nader Karimi, Shadrokh Samavi, and Kayvan Najarian. 2018. Polyp Segmentation in Colonoscopy Images using Fully Convolutional Network. In 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). IEEE, 69--72.Google ScholarGoogle ScholarCross RefCross Ref
  5. Jorge Bernal, Javier Sánchez, and Fernando Vilarino. 2012. Towards Automatic Polyp Detection with a Polyp Appearance Model. Pattern Recognition 45, 9 (2012), 3166--3182.Google ScholarGoogle ScholarDigital LibraryDigital Library
  6. Divya Bhaskaracharya, Rajesh Parameshwaran Nair, Prakashini K, Girish R Menon, Paul Litvak, Pitchaiah Mandava, Deepu Vijayasenan, and Sumam David S. 2021. A More Generalizable DNN based Automatic Segmentation of Brain Tumors from Multimodal Low-Resolution 2D MRI. In 2021 IEEE 18th India Council International Conference (INDICON). IEEE, 1--5.Google ScholarGoogle Scholar
  7. Patrick Brandao, Evangelos Mazomenos, Gastone Ciuti, Renato Caliò, Federico Bianchi, Arianna Menciassi, Paolo Dario, Anastasios Koulaouzidis, Alberto Arezzo, and Danail Stoyanov. 2017. Fully Convolutional Neural Networks for Polyp Segmentation in Colonoscopy. In Medical Imaging 2017: Computer-Aided Diagnosis, Vol. 10134. SPIE, 101--107.Google ScholarGoogle Scholar
  8. Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, and Ahmedin Jemal. 2018. Global Cancer Statistics 2018: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries. CA: a cancer journal for clinicians 68, 6 (2018), 394--424.Google ScholarGoogle Scholar
  9. Liang-Chieh Chen, Yi Yang, Jiang Wang, Wei Xu, and Alan L Yuille. 2016. Attention to Scale: Scale-Aware Semantic Image Segmentation. In Proceedings of the IEEE conference on computer vision and pattern recognition. 3640--3649.Google ScholarGoogle ScholarCross RefCross Ref
  10. Liang-Chieh Chen and Y Zhu. 2018. Semantic Image Segmentation with Deeplab in Tensorflow. Google AI Blog (2018).Google ScholarGoogle Scholar
  11. Miguel T Coimbra and JP Silva Cunha. 2006. MPEG-7 Visual Descriptors---Contributions for Automated Feature Extraction in Capsule Endoscopy. IEEE transactions on circuits and systems for video technology 16, 5 (2006), 628--637.Google ScholarGoogle ScholarDigital LibraryDigital Library
  12. Deng-Ping Fan, Ge-Peng Ji, Tao Zhou, Geng Chen, Huazhu Fu, Jianbing Shen, and Ling Shao. 2020. PraNet: Parallel Reverse Attention Network for Polyp Segmentation. In International conference on medical image computing and computer-assisted intervention. Springer, 263--273.Google ScholarGoogle Scholar
  13. Yuqi Fang, Cheng Chen, Yixuan Yuan, and Kai-yu Tong. 2019. Selective Feature Aggregation Network with Area-boundary Constraints for Polyp segmentation. In International Conference on Medical Image Computing and Computer-Assisted Intervention. Springer, 302--310.Google ScholarGoogle ScholarDigital LibraryDigital Library
  14. Jun Fu, Jing Liu, Haijie Tian, Yong Li, Yongjun Bao, Zhiwei Fang, and Hanqing Lu. 2019. Dual Attention Network for Scene Segmentation. In Proceedings of the IEEE/CVF conference on computer vision and pattern recognition. 3146--3154.Google ScholarGoogle ScholarCross RefCross Ref
  15. Kaiming He, Xiangyu Zhang, Shaoqing Ren, and Jian Sun. 2015. Spatial Pyramid Pooling in Deep Convolutional Networks for Visual Recognition. IEEE transactions on pattern analysis and machine intelligence 37, 9 (2015), 1904--1916.Google ScholarGoogle ScholarDigital LibraryDigital Library
  16. Sae Hwang, JungHwan Oh, Wallapak Tavanapong, Johnny Wong, and Piet C De Groen. 2007. Polyp Detection in Colonoscopy Video using Elliptical Shape Feature. In 2007 IEEE International Conference on Image Processing, Vol. 2. IEEE, II--465.Google ScholarGoogle ScholarCross RefCross Ref
  17. Debesh Jha, Pia H Smedsrud, Dag Johansen, Thomas de Lange, Håvard D Johansen, Pål Halvorsen, and Michael A Riegler. 2021. A Comprehensive Study on Colorectal Polyp Segmentation with ResUNet++, Conditional Random Field and Test-Time Augmentation. IEEE journal of biomedical and health informatics 25, 6 (2021), 2029--2040.Google ScholarGoogle Scholar
  18. Stavros A Karkanis, Dimitrios K Iakovidis, Dimitrios E Maroulis, Dimitris A. Karras, and M Tzivras. 2003. Computer-Aided Tumor Detection in Endoscopic Video using Color Wavelet Features. IEEE transactions on information technology in biomedicine 7, 3 (2003), 141--152.Google ScholarGoogle ScholarDigital LibraryDigital Library
  19. Nam Hee Kim, Yoon Suk Jung, Woo Shin Jeong, Hyo-Joon Yang, Soo-Kyung Park, Kyuyong Choi, and Dong Il Park. 2017. Miss Rate of Colorectal Neoplastic Polyps and Risk Factors for Missed Polyps in Consecutive Colonoscopies. Intestinal research 15, 3 (2017), 411.Google ScholarGoogle Scholar
  20. Nicolas Boutry Le Duy Huynh. 2020. A U-Net++ with Pre-trained Efficient-net Backbone for Segmentation of Diseases and Artifacts in Endoscopy Images and Videos. In CEUR Workshop Proceedings, Vol. 2595. 13--17.Google ScholarGoogle Scholar
  21. Takahisa Matsuda, Akiko Ono, Masau Sekiguchi, Takahiro Fujii, and Yutaka Saito. 2017. Advances in Image Enhancement in Colonoscopy for Detection of Adenomas. Nature Reviews Gastroenterology & Hepatology 14, 5 (2017), 305--314.Google ScholarGoogle ScholarCross RefCross Ref
  22. Subhashree Mohapatra, Tripti Swarnkar, and Jayashankar Das. 2021. Deep Convolutional Neural Network in Medical Image Processing. In Handbook of deep learning in biomedical engineering. Elsevier, 25--60.Google ScholarGoogle Scholar
  23. Olaf Ronneberger, Philipp Fischer, and Thomas Brox. 2015. U-net: Convolutional Networks for Biomedical Image Segmentation. In International Conference on Medical image computing and computer-assisted intervention. Springer, 234--241.Google ScholarGoogle Scholar
  24. Kashif Shaheed, Aihua Mao, Imran Qureshi, Munish Kumar, Sumaira Hussain, Inam Ullah, and Xingming Zhang. 2022. DS-CNN: A Pre-trained Xception Model based on Depth-wise Separable Convolutional Neural Network for Finger Vein Recognition. Expert Systems with Applications 191 (2022), 116288.Google ScholarGoogle ScholarDigital LibraryDigital Library
  25. Krishnan Shankar M, Yang Wen-jin, Chan Kap Luk, and Kumar Senthil. 1998. Intestinal Abnormality Detection from Endoscopic Images. In Proceedings of the 20th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. Vol. 20 Biomedical Engineering Towards the Year 2000 and Beyond (Cat. No. 98CH36286), Vol. 2. IEEE, 895--898.Google ScholarGoogle ScholarCross RefCross Ref
  26. Lequan Yu, Hao Chen, Qi Dou, Jing Qin, and Pheng Ann Heng. 2016. Integrating Online and Offline Three-Dimensional Deep Learning for Automated Polyp Detection in Colonoscopy Videos. IEEE journal of biomedical and health informatics 21, 1 (2016), 65--75.Google ScholarGoogle Scholar
  27. Lei Zhang, Sunil Dolwani, and Xujiong Ye. 2017. Automated Polyp Segmentation in Colonoscopy Frames using Fully Convolutional Neural Network and Textons. In Annual Conference on Medical Image Understanding and Analysis. Springer, 707--717.Google ScholarGoogle ScholarCross RefCross Ref
  28. Zongwei Zhou, Md Mahfuzur Rahman Siddiquee, Nima Tajbakhsh, and Jianming Liang. 2018. Unet++: A Nested U-Net Architecture for Medical Image Segmentation. In Deep learning in medical image analysis and multimodal learning for clinical decision support. Springer, 3--11.Google ScholarGoogle ScholarDigital LibraryDigital Library

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      ACM SE '23: Proceedings of the 2023 ACM Southeast Conference
      April 2023
      216 pages
      ISBN:9781450399210
      DOI:10.1145/3564746

      Copyright © 2023 ACM

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      Publication History

      • Published: 12 June 2023

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      ACM SE '23 Paper Acceptance Rate31of71submissions,44%Overall Acceptance Rate178of377submissions,47%
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