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Workflow for Understanding the Phenotypic Characteristics of Seals by Epigenetic Analysis

Published: 10 September 2023 Publication History
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References

[1]
Moore, L., Le, T. & Fan, G. DNA Methylation, and Its Basic Function. Neuropsychopharmacol 38, 23–38 (2013). https://doi.org/10.1038/npp.2012.112
[2]
Kandi, V., & Vadakedath, S. (2015). Effect of DNA Methylation in Various Diseases and the Probable Protective Role of Nutrition: A Mini-Review. Cureus, 7(8), e309. https://doi.org/10.7759/cureus.309\
[3]
Modhukur V, Sharma S, Mondal M, Lawarde A, Kask K, Sharma R, Salumets A. Machine Learning Approaches to Classify Primary and Metastatic Cancers Using Tissue of Origin-Based DNA Methylation Profiles. Cancers. 2021; 13(15):3768. https://doi.org/10.3390/cancers13153768
[4]
Xi, Y., & Li, W. (2009). BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinformatics, 10(1), 232. https://doi.org/10.1186/1471-2105-10-232
[5]
Krueger, F., & Andrews, S. R. (2011). Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics (Oxford, England), 27(11), 1571–1572. https://doi.org/10.1093/bioinformatics/btr167Dfsd
[6]
Chen, PY., Cokus, S.J. & Pellegrini, M. BS Seeker: precise mapping for bisulfite sequencing. BMC Bioinformatics 11, 203 (2010). https://doi.org/10.1186/1471-2105-11-203
[7]
Dinh, H. Q., Dubin, M., Sedlazeck, F. J., Lettner, N., Mittelsten Scheid, O., & von Haeseler, A. (2012). Advanced Methylome Analysis after Bisulfite Deep Sequencing: An Example in Arabidopsis. PLoS ONE, 7(7), e41528. https://doi.org/10.1371/journal.pone.0041528
[8]
Elena Y. Harris, Nadia Ponts, Karine G. Le Roch, Stefano Lonardi, BRAT-BW: efficient and accurate mapping of bisulfite-treated reads, Bioinformatics, Volume 28, Issue 13, July 2012, Pages 1795–1796, https://doi.org/10.1093/bioinformatics/bts264
[9]
Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907–915 (2019). https://doi.org/10.1038/s41587-019-0201-4.
[10]
Chen, Y., Pal, B., Visvader, J. E., & Smyth, G. K. (2017). Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR. F1000Research, 6, 2055. https://doi.org/10.12688/f1000research.13196.2
[11]
Zheng C, Xu R (2020) Predicting cancer origins with a DNA methylation-based deep neural network model. PLOS ONE 15(5): e0226461. https://doi.org/10.1371/journal.pone.0226461
[12]
Berg, H., Hjelmervik, K. T., Stender, D. H. S., & Sastad, T. S. (Sep 2016). A comparison of different machine learning algorithms for automatic classification of sonar targets. Paper presented at the 1-8. 10.1109/OCEANS.2016.7761112 https://ieeexplore.ieee.org/document/7761112
[13]
Berg, G. (2022). Image Classification with Machine Learning as a Service: - A comparison between Azure, SageMaker, and Vertex AI (Dissertation). Retrieved from http://urn.kb.se/resolve?urn=urn:nbn:se:lnu:diva-113829 

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cover image ACM Conferences
PEARC '23: Practice and Experience in Advanced Research Computing 2023: Computing for the Common Good
July 2023
519 pages
ISBN:9781450399852
DOI:10.1145/3569951
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