skip to main content
10.1145/3608164.3608178acmotherconferencesArticle/Chapter ViewAbstractPublication PagesicbbtConference Proceedingsconference-collections
research-article

Establishment and Application of Loop-Mediated Isothermal Amplification for Tea-Cigarette Identification

Published: 07 November 2023 Publication History

Abstract

To provide a rapid and simple test method for tea-cigarette identification, a loop-mediated isothermal amplification (LAMP) primers were designed for the conserved region of the selected Nicotiana-specific gene Ntsp151 sequence, and a visual LAMP detection method for tea-cigarette based on the SYBR Green I was established. The genomic DNA extraction method and reaction conditions were optimized in the detection process. Furthermore, the specificity and sensitivity of the LAMP reaction system were evaluated. The results exhibited that the genomic DNA extracted by Chelex-100 could be directly amplified and fluorescently colored by LAMP; the optimal reaction conditions of the LAMP primers were the amplification temperature 63 ℃, reaction time 60 min, Mg2+ concentration 6 mmol/L; LAMP detection method had good specificity and the results of the chromogenic amplification and fluorescence detection of 17 non-tobacco materials and 1 tobacco material were consistent. The sensitivity test showed that the minimum detection limit of the LAMP reaction system was 102 copies μL-1. The detection of LAMP based on Nicotiana-specific gene Ntsp151 was visualized, highly sensitive and specific, which was suitable for field inspection.

References

[1]
Tabuchi, T., Kiyohara, K., Hoshino, T., Bekki, K., Inaba, Y., Kunugita, N. 2016. Awareness and use of electronic cigarettes and heat-not-burn tobacco products in Japan. Addiction, 111 (4): 706-13. https://doi.org/10.1111/add.13231
[2]
State Bureau of Quality Technical Supervision. 1992. Flue-cured tobacco: GB2635-92. Beijing: China standard press, p 4-7 (in Chinese).
[3]
State Tobacco Monopoly Administration. 2018. Characteristic components of tobacco-Determination of alkaloids-Gas chromatography-mass spectrometry method and gas chromatography-tandem mass spectrometry method: YC/T 559-2018. Beijing: China standard press, p 1-20 (in Chinese).
[4]
Zhang Ke, Sun Haowei, Long Jie, Cai Jieyun, Wang Chunqiong, Zhang Xiaowei, Zhang Jiwu, Gai Xiaolei, Liu Zhonghua, Xiao Di, Yang Shuhan, Tong Zhijun, Chen Dan. 2022. Identification between tea-cigarette and cigarette based on the Nicotiana-Specific DNA molecular marker. 6th International Conference on Biological Information and Biomedical Engineering, BIBE 2022, China, CA, 19-25.
[5]
Grabicoski, E.M.G.; Jaccoud-Filho, D.S.; Lee, D.; Henneberg, L., Pileggi, M. 2020. Real-Time quantitative and ion-metal indicator LAMP-based assays for rapid detection of Sclerotinia sclerotiorum. Plant Dis., 104, 1514–1526. https://doi.org/10.1094/PDIS-07-19-1455-RE
[6]
Bonney, L.C.; Watson, R.J.; Slack, G.S., Bosworth, A., Wand, N. I. V., Hewson, R. 2020. A flexible format LAMP assay for rapid detection of Ebola virus. PLoS Neglected Trop. Dis., 14, e0008496. https://doi.org/10.1371/journal.pntd.0008496
[7]
Zhang Ke, Long Jie, Wang Chunqiong, Sun Haowei, Zhang Xiaowei, Zhang Jiwu, Cai Jieyun, Gai Xiaolei, Liu Zhonghua, Xiao Di, Yang Shuhan, Zhijun, Chen Dan. 2022. Research on specific molecular markers for the identification of Nicotiana plants. 6th International Conference on Biological Information and Biomedical Engineering, BIBE 2022, China, CA, 160-167.
[8]
Oh, T.; Takahashi, T.; Kim, S., Heller, M. J. 2016. CTAB enhancement of FRET in DNA structures. J. Biophotonics, 9, 49–54. https://doi.org/10.1002/jbio.201500221
[9]
Kuo, P.; Henderson, I.R.; Lambing, C. 2022. CTAB DNA extraction and genotyping-by-sequencing to map meiotic crossovers in plants. Methods Mol. Biol., 2484, 43–53. https://doi.org/10.1007/978-1-0716-2253-7_4
[10]
Liu, Y.; He, X.Y.; Ma, H.B. Wu, Y.L., Yang Y. M. 2006. Extraction of total RNA from cotton (Gossypium hirsutum L.) tissues with CTAB-PVP method. J. China Agric. Univ., 11, 53–56 (in Chinese).
[11]
Simon, N.; Shallat, T.J.; Wietzikoski, C.W.; Harrington, W. E. 2020. Optimization of Chelex 100 resin-based extraction of genomic DNA from dried blood spots. Biol. Methods Protoc., 5, bpaa009. https://doi.org/10.1093/biomethods/bpaa009
[12]
K. HwangBo, S. H. Son, J. S. Lee, S. R. Min, J. R. Liu, W. J. Jeong. 2010. Rapid and simple method for DNA extraction from plant and algal species suitable for PCR amplification using a chelating resin Chelex 100. Plant Biotechnol Rep, 4, 49–52. https://doi.org/10.1007/s11816-009-0117-4
[13]
Lewis R S, Bowen S W, Keogh M R, Dewey, R. E. 2010. Three nicotine demethylase genes mediate nornicotine biosynthesis in Nicotiana tabacum L.: Functional characterization of the CYP82E10 gene. Phytochemistry, 2010, 71: 1988-1998. https://doi.org/10.1016/j.phytochem.2010.09.011
[14]
Y. Tang, Y. Diao, C. Yu, X. Gao, L. Chen, D. Zhang. 2011. Rapid Detection of Tembusu Virus by Reverse-Transcription, Loop-mediated Isothermal Amplification (RT-LAMP). Transbound Emerg Dis., 59 (3): 208-13. https://doi.org/10.1111/j.1865-1682.2011.01257.x

Index Terms

  1. Establishment and Application of Loop-Mediated Isothermal Amplification for Tea-Cigarette Identification

        Recommendations

        Comments

        Information & Contributors

        Information

        Published In

        cover image ACM Other conferences
        ICBBT '23: Proceedings of the 2023 15th International Conference on Bioinformatics and Biomedical Technology
        May 2023
        313 pages
        ISBN:9798400700385
        DOI:10.1145/3608164
        Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than the author(s) must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected].

        Publisher

        Association for Computing Machinery

        New York, NY, United States

        Publication History

        Published: 07 November 2023

        Permissions

        Request permissions for this article.

        Check for updates

        Author Tags

        1. Nicotiana-specific gene
        2. Ntsp151
        3. genome
        4. loop-mediated isothermal amplification
        5. visualization

        Qualifiers

        • Research-article
        • Research
        • Refereed limited

        Funding Sources

        • This research was supported by the Yunnan Tobacco Company Research Project.

        Conference

        ICBBT 2023

        Contributors

        Other Metrics

        Bibliometrics & Citations

        Bibliometrics

        Article Metrics

        • 0
          Total Citations
        • 16
          Total Downloads
        • Downloads (Last 12 months)11
        • Downloads (Last 6 weeks)0
        Reflects downloads up to 18 Feb 2025

        Other Metrics

        Citations

        View Options

        Login options

        View options

        PDF

        View or Download as a PDF file.

        PDF

        eReader

        View online with eReader.

        eReader

        HTML Format

        View this article in HTML Format.

        HTML Format

        Figures

        Tables

        Media

        Share

        Share

        Share this Publication link

        Share on social media